Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa09g0864 ATGGCGGTTGCTGAGAATGCCGGAGCCATAATCGGCTCTTCCAATCAAAATTTGGACAGCAGTGTAGTATCATCGGACTCAACAGTGACAAATGAGCTGGAAAAATCGAAGCCCCGAACTGGTTCCATTGGAAATGGTGTAGAAACAAATGTTCAGCCCATCAACGGCGATCAGAACCTGAACGCTGTGTTCAACCACCAGGACAGAGTTCCGACGTCTGTATCGGCGCCTAACGGGAATTACAAACCTCAAATGACTCAGATGCGAAATGGGTTTGAGGCAAATGGGGTCCAGAACCAGCAGATGGCGGTTAACAATGGTGGATACGGGATTAAGCAGATGTCTAACGGAGTCAGAAATGAAGAAGACGGTGGTGAGAGTTTTAAGCGCGATATGAGGGATTTGGCGGAATTGCTGTCGAAGTTGAATCCCATGGCTGAGGAATTCGTGCCCCCATCACTTACTAATAATCATGGGTTCTTAGGTGGTGGTGCGTTCGGCTACGCTAACAATTTTCTACTCCACACTAATTTTGGCAATGCCAATAGCCATACTAACAGAAGGAGGAAGAATGGCTATAATCAGGGGAAGCGAAGAGCGAACAATAAAATGGAAATGGAGAAGAGAGAAGAGATGATTAGGAAGACTGTTTATGTGTCTGACATTGATCAACAGGTTACTGAAGAGCAGCTAGCAGCTCTCTTTCTTAACTGCGGCCAGGTTGTTGATTGCCGAGTCTGTGGGGACCCTAATTCTATTCTTCGTTTTGCCTTCATTGAGTTTACAGATGAAGAGGGTGCAAGGGCTGCTTTGAATCTGTCTGGCACCATGCTTGGATATTACCCAGTGAGAGTGCTGCCTTCAAAAACTGCTATTGCACCAGTTAATCCCTCATTTCTGCCCAGGTCTGAAGATGAAAGGGAGATGTGCTCAAGAACTATTTATTGCACAAATATTGACAAGAAGGTTACTCAAGCAGATGTTAGACTCTTCTTTGAATCTCTTTGCGGAGAGGTTCAACGCTTGAGGCTTCTTGGAGATTACCATCACTCAACTAGAATTGCATTTGTTGAGTTCACAATGGCTGAAAGTGCAATTGCTGCTTTGAACTGTAGTGGTGTGGTTTTGGGTTCGCTACCTATCAGGGTAAGTCCATCAAAGACACCTGTCCGGTCTCGTGCACCACGTGCTTCAATGCACTAA 1203 0.4564 MAVAENAGAIIGSSNQNLDSSVVSSDSTVTNELEKSKPRTGSIGNGVETNVQPINGDQNLNAVFNHQDRVPTSVSAPNGNYKPQMTQMRNGFEANGVQNQQMAVNNGGYGIKQMSNGVRNEEDGGESFKRDMRDLAELLSKLNPMAEEFVPPSLTNNHGFLGGGAFGYANNFLLHTNFGNANSHTNRRRKNGYNQGKRRANNKMEMEKREEMIRKTVYVSDIDQQVTEEQLAALFLNCGQVVDCRVCGDPNSILRFAFIEFTDEEGARAALNLSGTMLGYYPVRVLPSKTAIAPVNPSFLPRSEDEREMCSRTIYCTNIDKKVTQADVRLFFESLCGEVQRLRLLGDYHHSTRIAFVEFTMAESAIAALNCSGVVLGSLPIRVSPSKTPVRSRAPRASMH 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa09g0864 400 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 217 279 IPR000504 GO:0003723
Bisa09g0864 400 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 314 381 IPR000504 GO:0003723
Bisa09g0864 400 CDD RRM2_CID8_like 308 389 IPR034825 -
Bisa09g0864 400 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 137 393 - -
Bisa09g0864 400 SUPERFAMILY RNA-binding domain, RBD 189 291 IPR035979 GO:0003676
Bisa09g0864 400 SUPERFAMILY RNA-binding domain, RBD 301 393 IPR035979 GO:0003676
Bisa09g0864 400 FunFam Polyadenylate-binding protein-interacting protein 10 306 384 - -
Bisa09g0864 400 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 215 290 IPR000504 GO:0003723
Bisa09g0864 400 MobiDBLite consensus disorder prediction 183 206 - -
Bisa09g0864 400 FunFam Polyadenylate-binding protein-interacting protein 11 180 292 - -
Bisa09g0864 400 Pfam Ataxin-2 C-terminal region 139 153 IPR009818 -
Bisa09g0864 400 SMART rrm1_1 216 286 IPR000504 GO:0003723
Bisa09g0864 400 SMART rrm1_1 313 384 IPR000504 GO:0003723
Bisa09g0864 400 MobiDBLite consensus disorder prediction 14 49 - -
Bisa09g0864 400 CDD RRM1_CID8_like 213 292 IPR034823 -
Bisa09g0864 400 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 312 388 IPR000504 GO:0003723
Bisa09g0864 400 Gene3D - 176 292 IPR012677 -
Bisa09g0864 400 Gene3D - 298 395 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa09g0864 Bisa-ChrBisa09 12487574 12491508 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa09g0864 214 383 Eukaryotic Initiation Factors Gene Family AT1G34140 25.287 9.45e-11 61.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa09g0864 09 12487574 12491508 Bisa09g0864 09 12487574 12491508 ECH