Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa09g0862 ATGAGTGGTCGCTTTTCTCGCACAATTTATGTTGGCAACTTGCCTTCGGATATCAGGGAATCAGAAATTGAAGATCTATTCTACAAGTATGGCCGTATATTGGATATTGAGTTAAAGATTCCACCACGCCCTCCATGTTATTGTTTTGTTGAGTTTGACAATGCGCGAGATGCAGAAGAAGCAATCAGGGGTCGTGATGGATACAACTTTGATGGTTGTCGGTTAAGAGTGGAGCTTGCTCATGGTGGCAGGGGACCATCATCAAATGATCGCCGTGGCTATGGTGGCAGCGGCGGCGGCGGTAGCGGTAGCGGCGGTAGCGGTAGCGGCGGTCGTTTTGGCAACTCTCGCCATTCTGAATTTCGAGTTATTGTTCGTGGACTCCCATCTTCGGCATCCTGGCAAGATTTGAAGGATCATATGCGGAAAGCTGGCGATGTGTGTTTTGCCGACGTTACACGTGATAGTGAAGGGACTTTTGGCATTGTTGACTACACTAATTATGAGGACATGAAATATGCTATTCGGAAACTGGATGACACTGAGTTTAAGAATCCTTGGGCAAGAGCATATATTCGGGTGAGGAAGTATGAGAACAGTCCCTCAAGGAGTCGCAGCAGAAGCCCTGGCAGGAGCAGAAGTCCTAAAAGGATTAGAAGTAGGTCATTGGAGCGATCTGTCTCGAGGTCTCCATCTAGATCCAGATCAGCATCACCAATAAAGTCTTCCAGACCAAGGTCAAGATCACGATCTAGATCTCCACGCCAGGGTTTTAGAGGATACCTAAATTGTTGGTTTAAATTGCTTTGA 810 0.4691 MSGRFSRTIYVGNLPSDIRESEIEDLFYKYGRILDIELKIPPRPPCYCFVEFDNARDAEEAIRGRDGYNFDGCRLRVELAHGGRGPSSNDRRGYGGSGGGGSGSGGSGSGGRFGNSRHSEFRVIVRGLPSSASWQDLKDHMRKAGDVCFADVTRDSEGTFGIVDYTNYEDMKYAIRKLDDTEFKNPWARAYIRVRKYENSPSRSRSRSPGRSRSPKRIRSRSLERSVSRSPSRSRSASPIKSSRPRSRSRSRSPRQGFRGYLNCWFKLL 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa09g0862 269 Gene3D - 121 198 IPR012677 -
Bisa09g0862 269 SUPERFAMILY RNA-binding domain, RBD 6 192 IPR035979 GO:0003676
Bisa09g0862 269 SMART rrm1_1 8 78 IPR000504 GO:0003723
Bisa09g0862 269 SMART rrm1_1 122 191 IPR000504 GO:0003723
Bisa09g0862 269 MobiDBLite consensus disorder prediction 81 113 - -
Bisa09g0862 269 MobiDBLite consensus disorder prediction 198 255 - -
Bisa09g0862 269 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Bisa09g0862 269 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 7 253 - -
Bisa09g0862 269 Gene3D - 2 120 IPR012677 -
Bisa09g0862 269 CDD RRM2_SF2_plant_like 121 196 - -
Bisa09g0862 269 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 121 199 IPR000504 GO:0003723
Bisa09g0862 269 MobiDBLite consensus disorder prediction 229 244 - -
Bisa09g0862 269 FunFam serine/arginine-rich splicing factor SR34A-like 121 198 - -
Bisa09g0862 269 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Bisa09g0862 269 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 123 185 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa09g0862 Bisa-ChrBisa09 12444505 12454133 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa09g0862 9 183 Eukaryotic Initiation Factors Gene Family AT4G34110 23.889 2.02e-07 50.1