Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa09g0807 ATGGAAACATCGGGTGCTAATTCAGAACAAAACGTCATTTCATCATCATCATCGTCATCATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCTTCCTTCTTCCGGAGGTGTAAATAATGTTAGTAGTGATAGCAGTGCCAATTCTGAAACCTGGTATCGGATGAGGTTACCCCCTGTCAGCCCTTTCCGCTCTCCAATTTCTGTCTTGTTGAATTACGCGGGCATTCTCCGCTCCAGTTCGTCAACACATGATTCAGAGGCTGTGACAGTCAACAACGGAGTTAGAACTTCTGAAATACGTTCTCAGTTTTCTGATTCTGCCACCGCGTGCTCTGGCGGCAGCAGTGGCAGTACTGGGGAAGTTTCAATACGGATCATTGGAGCTGGAGAACAAGAACCCAATGTGGGGTTAGGTTCTTTTTCTTCTCCCTCCCAGAATCAGGAAGTCGATCATGATGCTTTGATGGGAAATAGAGGAGGAATGCCCGCATTGGATGACGATGCTGAGGATGTCAGTGGAAGAGTCTCTCTAGTGTCTTCATCTACATCGGCTGCTGGTGGAGAGTTGAATGAAGCTGTTGGGAATGGCTTGGAAGGCAACAGCAGGGATTCATCCTCTTACCAGAGGTATGATATTCAGCAGATTTCCAAGTGGATTGAGCAAATTCTTCCTTTCTCACTGTTGTTGCTGGTTGTTTTCATTCGTCAACATTTGCAAGGTTTCTTTGTCACAATATGGATTTCAGCTGTGATGTTCAAATCAAATGAAATTGTCAAGAAGCAGACAGCGCTAAAGGGAGATAGGAAAGTCTCTATTCTTATTGGTATCTCTCTTGCTTTCATGCTTCACGTGATGTGCATTTACTGGTGGTATCGAAATGATGATCTTTTATACCCACTGATCATGGTTCCTCCAAAATCAGCTCCTCCATTCTGGCATGCTATATTCATCATTCTGGTTAATGATACACTGGTGCGGCAAGTAGCAATGGCTTTCAAATGTTTGTTGCTTATATATTACAAAAATGGAAGAGGACATAATTTCCGTCGGCAGGGTCAAATGTTAACTCTGGTTGAGTACACACTGCTGTTATATCGTGCCTTGTTGCCAACACCAGTTTGGTACCGATTTTTCTTAAACAAGGATTATGGAAGCCTCTTTTCATCACTGACCACAGGGTTATATTTAACTTTCAAGCTAACATCTGTAGTTGAGAAGGTCCGATGCTTCTTTTCTGCCATAAAAGCATTATCAAGAAAGGAAGTTCATTATGGAATTTATGCCACAATGGAACAGGTAAATGCTGCTGGAGACCTATGTGCTATATGCCAAGAGAAGATGCAGACTCCAGTTTTGTTGCGCTGCAAACATATTTTCTGCGAGGAGTGTGTCTCAGAATGGTTTGAGAGAGAACGGACTTGCCCGCTATGCAGAGCATTGGTAAAACCTGCTGACTTGAAGACCTTCGGAGATGGATCAACAAGTCTAATTTTCCAGCTGTTTTAA 1509 0.4294 METSGANSEQNVISSSSSSSSSSSSSSSSSSLPSSGGVNNVSSDSSANSETWYRMRLPPVSPFRSPISVLLNYAGILRSSSSTHDSEAVTVNNGVRTSEIRSQFSDSATACSGGSSGSTGEVSIRIIGAGEQEPNVGLGSFSSPSQNQEVDHDALMGNRGGMPALDDDAEDVSGRVSLVSSSTSAAGGELNEAVGNGLEGNSRDSSSYQRYDIQQISKWIEQILPFSLLLLVVFIRQHLQGFFVTIWISAVMFKSNEIVKKQTALKGDRKVSILIGISLAFMLHVMCIYWWYRNDDLLYPLIMVPPKSAPPFWHAIFIILVNDTLVRQVAMAFKCLLLIYYKNGRGHNFRRQGQMLTLVEYTLLLYRALLPTPVWYRFFLNKDYGSLFSSLTTGLYLTFKLTSVVEKVRCFFSAIKALSRKEVHYGIYATMEQVNAAGDLCAICQEKMQTPVLLRCKHIFCEECVSEWFERERTCPLCRALVKPADLKTFGDGSTSLIFQLF 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa09g0807 502 CDD RING-HC_RNFT1-like 439 479 - -
Bisa09g0807 502 ProSitePatterns Zinc finger RING-type signature. 456 465 IPR017907 -
Bisa09g0807 502 MobiDBLite consensus disorder prediction 136 152 - -
Bisa09g0807 502 ProSiteProfiles Zinc finger RING-type profile. 441 479 IPR001841 -
Bisa09g0807 502 MobiDBLite consensus disorder prediction 1 48 - -
Bisa09g0807 502 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 25 502 IPR044235 GO:0061630|GO:1904294
Bisa09g0807 502 SMART ring_2 441 478 IPR001841 -
Bisa09g0807 502 Pfam Zinc finger, C3HC4 type (RING finger) 439 482 - -
Bisa09g0807 502 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 418 489 IPR013083 -
Bisa09g0807 502 SUPERFAMILY RING/U-box 431 484 - -
Bisa09g0807 502 MobiDBLite consensus disorder prediction 135 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa09g0807 Bisa-ChrBisa09 11646138 11652892 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa09g0807 64 502 C3H Transcription Factor Family AT5G01960 64.786 0.0 577