Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa09g0794 ATGGGTAGACGAAAACAAAGTAGACCACATAGATCAGGCGGGGTAACACTAGAAACACACACAACTGCTGGAGCAGAATTGGATAAACAGAAAATAGGGGAAACAGGGGAAGAAGCAAAGGAAGATTTTGGTGAAATTGATAAACCCTACTTTGTGGAAGTTGATAGGACCAGTTGGTTATCAAATGAACACCTTGATATTTCAGAAGTTGTTATAACTGATATAGATTTGAAAGTAGATTTATCTGGCTTGGAACTTTCCGAGGACTTTTATCAGGATTTCCAATATTCTTTAAGATTTCGGGTGTGTAATGTCAATCATATTCTTGGTCGAATTAAATTAGGCCAGTGGCCTGTATTGCCTTATACTGATATTCATCTGGAGTTTGTAAAAAGAGTAGCAATGGATCAAATGGAAACATGTACAGTGCTGTTATCTGGGGTTTTTGATGGACCTGATGAAGGTGTTTCTGGTCTCATTCACTTGGTGAATATAAAATTTCTGACGTTGAGGCCAGTTCTTGGGATTAGAACTTCTGAGGACATGTTCTCCCTTAGATTAAGGGTTGAGATACTAAAGAGTGCCTTTAATGCATGTGAGTCACTTCTAGATGGTTCCAGACAACTATGGAAAAAGAGTATGATGAATGTCATGTCTTGGCTACGTCCTGAAATAATGACATCAGAAACTAGGTATGGGGTTGGTAGCTATATGAAAATGGAAGTTGATTCACAGACAGAGATGGGAGATGAAACTTGCAATGCCAAGAAACATGTGAGGTTTGATCCTGCAGGTTTCTACGAAGCCATTAGACCTTCGAAATTGGAACCAATGCTTCTAGATGACATACCGGACTTACTTCCGGAATTGAGACCATATCAACGGCGTGCAGCTTTCTGGATGATAGAAAGAGAGAAAAAAAGAGGAGGTCAGGGGGAAAGAGAGAAAAGTCATTTTGATTCTCCTTTAAGTGTGCCTGTGAATTTTATTGACATGAGTTCTAAAATGTTCTTTAATCCATTCAGTGGAAATATTTCATTGTACCCAGAACCTTCCGCACCTTATGTCTTTGGAGGCATTCTTGCTGATGAGATGGGCCTGGGAAAAACTGTTGAACTGCTTGCTTGTATCTTTGCTCACCGGAGATTGGCATCAAAAAGTGACATTATTGATTCAGAGTTGCAAGTTAATGGGGATCAAAAAGTCAATTTTAAACGACTCAAAAGAGATCGTGTAGAGTGCACATGTGGAGCTGTGAGTGAAAGTCTCAAATATAAAGGTCTATGGGTTCAGTGTGACATTTGTGATGCTTGGCAACATGCAGATTGTGTTGGTTATTCACCTAGAGGAAAATCACTGAAATCAAAACAGGGATCTGAAAGCAAGAAATTTAAGACCACTATAGCTGTGAGGGATGGGGAATATGTATGCCAAATGTGCTCTGAACTAATACAAGCTACTGAATCTCCTATTGCCTCTGGTGCCACTCTTATTGTTTGTCCAGCTCCTATTTTGCCCCAGTGGCATGATGAAATTATCCGTCATACACGTCCAGGCTCCTTGAAAACTTTTGTTTATGAAGGCGTGCGAGAGACATCTTTCACCAATACATCTCTGGTGAATATCAGTGAACTTGCCTCTGCTGACGTTGTATTAACAACATATGATGTGCTTAAAGAGGATTTGTCTCATGATTCTGATAGGCATGAAGGTGATCGGCACCTTTTGAGATTTCAGAAAAGGTACCCAGTTATCCCAACTCTTCTTACCAGAATATACTGGTGGAGGGTTTGTCTGGATGAGGCTCAAATGGTGGAGAGTAATGCGGCAGCTGCCACTGAAATGGCTCTGCGGCTTTATGCAAAGTATCATTGGTGCATTACAGGAACCCCTATTCAGCGTAAGCTTGATGACTTACATGGACTATTAAGATTTCTTAAAGCAAGTCCTTTCAATATTTACCGGTGGTGGACTGATGTTATTCGGGATCCTTATGAGAATGGAGATATTGGAGCTATAGAATTTACACATAAATTTTTTAAACAAATTATGTGGCGCTCTTCAAAAGAACATGTTGCAGATGAGTTGCAGCTTCCTTCCCAGGAGGAGTGCCTTTCTTGGCTCACTCTCTCACCAGTAGAAGAGCACTTTTACCAAAGGCAACATGAAACGTGTGTTAACTATGCTCATGAAATTATTGAAAGTTTGAGAAATGATATTCTTAATAGAAGAATCCCAGGTTGTGTTTCTTCAGATGATTTTTCTGATTCTTTCATCACTCACACAGAGGCGGGGAAACTACTGAATGCTCTGCTGAAGCTTCGCCAGGCTTGTTGTCACCCTCAGGTTGGAAGCTCTGGTTTGCGTTCTCTGCAGCAATCTCCCATGACCATGGAGGAAATATTGATGGTTCTTATAAGTAAGACTAAGATAGAAGGTGAGGAAGCTCTTAGGAGGTCAGTTGTTGCTTTAAATGGGCTTGCAGCAATAAGCCTAATGCAGAAGGATTTTTCTCAAGCAGCATTGCTCTACAATGAAGCACTGACTTTGGCTGAAGAGCATTCTGAAGATTTCCGCCTGGATCCTTTGTTAAATATCCACATTCATCATAATCTTGCTGAAATACTCCCACAGACTACAAATTTTTCCCTAGAGTTCCGCTCCAAAGGAAGGCAGATCTCTAAAACTTCTGAACTTAAGACAACAAGAAAACATGCCCTTGAAAAGGTTGATCATTGTTTTGTTAAGAGGAAGAAAGGGAATGGCTCTGATGATATAGATTACAAAATGCCTTCTGGAGAACCATTGAATGTCACATCTAGCTCGTTAGAAAATTACTCAAATAGGTGTCCAGAGTTTGATGATGCATCTATCAGTTCTGTAAAATATTTAATAGCAGAATGTGAAGATTTGAAACAGAAATACTTATCTGTGTTCAGTTCAAAGCTCTCTGCAGTCCAACAAGAGTTTAAAAAATCTTATATGCAGGTTTGTAATTCATACAGTGACAGTACAAATGAACCTATGATTTGGTGGTTGGAAGCACTTGACCATGCTGAGCAGAACAAGGATTTCAAAAATGAGTTGCTTAGGAAGATTGAAGAAGCAATTTCAGGAACTTTAAACAATTCAAAATCACAAAGAATTGCTGCTCGATTCCAAAGCATACACTCTCTGAAGTATCAAATCCAGACGGGTCTGGATCAATTAGAAGCTTCTAGGAAAGTGCTACTTGATCGACTTTTAGAAATTGATCAAACAATGGAAAAACCAAAAGAAGAGGACATTGAACGTGTGGGTAAATGTAGAAATTGCCAACCTGATTCTGATGGTGCACCATGCATCCTGTGCGAACTTGATGAATTATTTCAGGATTATGAAGCAAGACTATTTGTTCTTAAGAATGAACGTGGAGGTCTAATATCATCTGCTGAGGAGGCAGTAGATTTGCAGAAGAAAAATTTTGCATTGAATCGTTTCCTCTCAAAGCTATCACAGTCTAACCACAGTTCAACAGCATCTGATATTGGCAATGAAGAATCGAAAAAAAGAAATGTTGGAGAAAGAGTTATGGTTTCAAGATCAGCATCTCAATTGGAAGTTATTCTTGGAGTTTTAAAGAACTACTGCAAGGCTCGGTTGGGAAGGGATAGTGTTTCAGCAGCCACCAAACATTTACATATTTTTGAGGGACTGCGAAAGGAGTTTGGTCATGCAAGGTCTTTGGCATTAGCTCAAGCTCAATATCTGCGTGCCCATGATGAAATCAAGATGGCAGTTTCCCGGTTGCACCTAAGGGCAAATGAAAATGATAAGTCTCTTGATGCTTTAGGTGAAAATGAATTGTCTGCAGCCAGTTCAAACTTTTCCCATGATAAGTTTATGTCGTTGGCCTTGTTGTCACAGATAAAAGGGAAGCTCCGCTACTTAAAGGGTTTGGTACAATTGAAACAAAAACGGCCATTGGAAAGTCCAGAAAGTTCATTCACTCAGGAGACTACTGCAATGTCAAATTCTAGGGAAGAGAAGGGTGCACTCATACCTAAACCTGATGAGGATTCATGCCCAGTTTGCCAAGAAAAGCTAGGCAGTCAGAAAATGGTTTTTCAGTGTGGGCACGTTACATGTTGTAAATGTTTATTTGCTATGACTGAGCAAAAGCTTCAAGATAGCAAGTTTCATAAATGGGTTATGTGCCCTACATGTCGACAGCACACTGATTTTGGGAACATTGCTTATGCTGTTGATAGACAGAATGAATCTTCCAATTCTTCTATGCTGCACACTATTGACAACAGTGAAAAACATGAATCGTCCATCGCTGTTAAAGGTTCATATGGAACAAAGATTGAAGCAGTCACAAGAAGAATGTTGTGGATCAAGTCTACAGATCCTAAAGCAAAAGTCCTTGTATTTTCTAGTTGGAATGATGTTCTTGATGTATTGGAACATGCGTTTACTGCCAATAACATCACCTACATCCGAATGAAAGGAGGCAGAAAATCACATGTTGCCATCAGTCAATTTAGAGGACAGCAGAATGGCAGGAAAGGATGTAACAACTCGATAACCCAGGAATCTACCTCAAAATTTGTTCAGGTTTTATTAATTTTGATTCAACATGGGGCCAATGGCCTCAATCTTCTAGAGGCACAGCATGTGGTTCTTGTGGAGCCATTACTCAATCCAGCTGCTGAAGCACAAGCAATCAGTCGTGTGCACCGGATTGGACAGAAAAATAAGACTCTCATTCATCGTTTCATTGTAAAAGACACAGTTGAAGAGAGCATATATAAATTGAACAGAAGCAGGAGTAATCATTCATTCATCAGTGGTAACACAAAAAGTCAAGACCAACCTGTGTTGACCCTTAAAGATGTTGAATCCTTGCTAGCAACAGCTCCATTAACAATTCCAGAAAGCGAAGAAAATCCTACTGTGAGTCTGAGGCACTTGCCGCCTTCAATGGCCGCGGCTATTGCTGCTGAGAGGAGACTCAATAAACAAAGGACATGA 5016 0.3997 MGRRKQSRPHRSGGVTLETHTTAGAELDKQKIGETGEEAKEDFGEIDKPYFVEVDRTSWLSNEHLDISEVVITDIDLKVDLSGLELSEDFYQDFQYSLRFRVCNVNHILGRIKLGQWPVLPYTDIHLEFVKRVAMDQMETCTVLLSGVFDGPDEGVSGLIHLVNIKFLTLRPVLGIRTSEDMFSLRLRVEILKSAFNACESLLDGSRQLWKKSMMNVMSWLRPEIMTSETRYGVGSYMKMEVDSQTEMGDETCNAKKHVRFDPAGFYEAIRPSKLEPMLLDDIPDLLPELRPYQRRAAFWMIEREKKRGGQGEREKSHFDSPLSVPVNFIDMSSKMFFNPFSGNISLYPEPSAPYVFGGILADEMGLGKTVELLACIFAHRRLASKSDIIDSELQVNGDQKVNFKRLKRDRVECTCGAVSESLKYKGLWVQCDICDAWQHADCVGYSPRGKSLKSKQGSESKKFKTTIAVRDGEYVCQMCSELIQATESPIASGATLIVCPAPILPQWHDEIIRHTRPGSLKTFVYEGVRETSFTNTSLVNISELASADVVLTTYDVLKEDLSHDSDRHEGDRHLLRFQKRYPVIPTLLTRIYWWRVCLDEAQMVESNAAAATEMALRLYAKYHWCITGTPIQRKLDDLHGLLRFLKASPFNIYRWWTDVIRDPYENGDIGAIEFTHKFFKQIMWRSSKEHVADELQLPSQEECLSWLTLSPVEEHFYQRQHETCVNYAHEIIESLRNDILNRRIPGCVSSDDFSDSFITHTEAGKLLNALLKLRQACCHPQVGSSGLRSLQQSPMTMEEILMVLISKTKIEGEEALRRSVVALNGLAAISLMQKDFSQAALLYNEALTLAEEHSEDFRLDPLLNIHIHHNLAEILPQTTNFSLEFRSKGRQISKTSELKTTRKHALEKVDHCFVKRKKGNGSDDIDYKMPSGEPLNVTSSSLENYSNRCPEFDDASISSVKYLIAECEDLKQKYLSVFSSKLSAVQQEFKKSYMQVCNSYSDSTNEPMIWWLEALDHAEQNKDFKNELLRKIEEAISGTLNNSKSQRIAARFQSIHSLKYQIQTGLDQLEASRKVLLDRLLEIDQTMEKPKEEDIERVGKCRNCQPDSDGAPCILCELDELFQDYEARLFVLKNERGGLISSAEEAVDLQKKNFALNRFLSKLSQSNHSSTASDIGNEESKKRNVGERVMVSRSASQLEVILGVLKNYCKARLGRDSVSAATKHLHIFEGLRKEFGHARSLALAQAQYLRAHDEIKMAVSRLHLRANENDKSLDALGENELSAASSNFSHDKFMSLALLSQIKGKLRYLKGLVQLKQKRPLESPESSFTQETTAMSNSREEKGALIPKPDEDSCPVCQEKLGSQKMVFQCGHVTCCKCLFAMTEQKLQDSKFHKWVMCPTCRQHTDFGNIAYAVDRQNESSNSSMLHTIDNSEKHESSIAVKGSYGTKIEAVTRRMLWIKSTDPKAKVLVFSSWNDVLDVLEHAFTANNITYIRMKGGRKSHVAISQFRGQQNGRKGCNNSITQESTSKFVQVLLILIQHGANGLNLLEAQHVVLVEPLLNPAAEAQAISRVHRIGQKNKTLIHRFIVKDTVEESIYKLNRSRSNHSFISGNTKSQDQPVLTLKDVESLLATAPLTIPESEENPTVSLRHLPPSMAAAIAAERRLNKQRT 1671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa09g0794 1671 MobiDBLite consensus disorder prediction 24 39 - -
Bisa09g0794 1671 Pfam SNF2-related domain 293 783 IPR000330 GO:0005524|GO:0140658
Bisa09g0794 1671 MobiDBLite consensus disorder prediction 1 39 - -
Bisa09g0794 1671 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER 1 1669 - -
Bisa09g0794 1671 SMART PHD_3 413 481 IPR001965 -
Bisa09g0794 1671 Gene3D - 481 708 IPR038718 -
Bisa09g0794 1671 Gene3D - 353 412 IPR038718 -
Bisa09g0794 1671 CDD PHD_TCF19_like 416 480 - -
Bisa09g0794 1671 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 275 677 IPR027417 -
Bisa09g0794 1671 CDD SF2_C_SNF 1446 1588 - -
Bisa09g0794 1671 ProSiteProfiles Zinc finger RING-type profile. 1355 1403 IPR001841 -
Bisa09g0794 1671 SUPERFAMILY RING/U-box 1350 1407 - -
Bisa09g0794 1671 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1452 1628 IPR001650 -
Bisa09g0794 1671 MobiDBLite consensus disorder prediction 1321 1348 - -
Bisa09g0794 1671 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 593 1620 IPR027417 -
Bisa09g0794 1671 Gene3D - 1424 1638 IPR027417 -
Bisa09g0794 1671 CDD DEXQc_SHPRH 290 687 - -
Bisa09g0794 1671 MobiDBLite consensus disorder prediction 1168 1187 - -
Bisa09g0794 1671 Coils Coil 1016 1036 - -
Bisa09g0794 1671 SUPERFAMILY FYVE/PHD zinc finger 410 482 IPR011011 -
Bisa09g0794 1671 SMART helicmild6 1480 1577 IPR001650 -
Bisa09g0794 1671 SMART ring_2 1355 1402 IPR001841 -
Bisa09g0794 1671 SMART ultradead3 286 656 IPR014001 -
Bisa09g0794 1671 Pfam Helicase conserved C-terminal domain 1452 1577 IPR001650 -
Bisa09g0794 1671 ProSitePatterns Zinc finger PHD-type signature. 414 480 IPR019786 -
Bisa09g0794 1671 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1343 1423 IPR013083 -
Bisa09g0794 1671 MobiDBLite consensus disorder prediction 1321 1340 - -
Bisa09g0794 1671 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 413 480 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa09g0794 Bisa-ChrBisa09 11446119 11462605 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa09g0794 488 781 RAD5 or RAD16-like Gene Family AT5G22750 31.438 5.61e-36 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Bisa09g0794 SNF2_N 5.8e-83 CL0023