Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa09g0793 ATGCAAAGACAAAGCAAGGTGACTTGGAATCTATCATATCTATGTATCTATTCACCCTTCGCAATTCACAAAACAATACCAACCGTCCGATCCTCATTCACTCTATTACTACCCTCCCATTTATACCTACCTTACCCCCCACGGCCTTCTCTTTCTCTTTTTCTTCATCTCTCATCGCTGACGGTCTACAGCAGCCGCCGGGGACTTCATTCTGGTGAGTTTTCACGGTCTTCGGTAGTTTCTGCTTTTGTTTTGCGTGTTATTTGCTCCTATTCTTATCGATCTGGTTGCTTTGTGTGCTTAGGAGAAGTTATTTGTTTAAAGGGGCCTCCGATGGAGAAAGAGTTGGTCGGATTGTACGATGCGGTAAAAAAGGCGGCTGATGCTGCGAACTCCACCGATAGCGAAGCTGATGAGAGTCGATGCCTTGATGCGTTCGAGCAGCTTAAGAAATTCCCCGTCAATTATCAAATTCTAGTATCCACACAGGTGGGCAAACGTCTAAAAGTTCTAACGAAACATCCGAGGAAGAAAATCCGGGCTTTTGCTGTTGACCTGATTGAGATATGGAAAGACATAATCATTAAGGAAACAACCAGAACTAAGAATGGGAGCTCACATAATAATGTTGAGATGGCTAAAGCTGAGAAGGTTCAGAAGGCACATTCAGTAAAGGTTGAGAAGGTTTCAAAGGCTGACACTGTCAAAATTGAGAAAACTGATAAGAATGGTACATCAAGCTCAGATAATGTAAAGAAGGTACAAGTTTCAGATGTCAAAAATGAGAAAGCTGTTTCTGCTGCAAATGTTAAGGTAGAAAAGTTAGCCAAAGACGAGAAGCAAGCTTCTGCAATGAAGAAGGCATCCCCAAGCCCAGCTGCTCCACCGAAGCTGAAAACTATGATTAAATCTAATGATGCGATGCGAGACAAAATAAGGGAAATTCTCCAAGAGGCGTTCTCTAAGGTTTCTGGAGAGGCTGATGAAACAAACATGGATCAAGTTAATGCTTGTGACCCAATTCGGGTTGCTGTTACAGTGGAGTCTGTATTATTTGAGAAGTGGGGTCCTTCTAACGGAGCTCAAAAGGTCAAGTATAGGTCCTTAATGTTTAACCTCAAGGATCCAAATAACCCAGATTTCCGAAGAAAAGTTCTACTTGGAGAATTTCAACCTGAGCGGTTGATCAATATGAGCACAGCAGACATGGCTAGCGATCAAAGGAAGCAGGAGAATGAGAAACTCAAACAGAAAGCTTTATTTGAGTGTGAGCGTGGACAGCAACCAAAAGCCACAACTGATCAATTCAAGTGTGGTCGATGTGGTCAACGGAAGTGCACCTATTACCAAATGCAAACTCGCAGTGCTGATGAACCTATGACAACCTACGTCACATGTGTAGCATGTAATAACCGTTGGAAATTCTGTTAG 1431 0.4277 MQRQSKVTWNLSYLCIYSPFAIHKTIPTVRSSFTLLLPSHLYLPYPPRPSLSLFLHLSSLTVYSSRRGLHSGEFSRSSVVSAFVLRVICSYSYRSGCFVCLGEVICLKGPPMEKELVGLYDAVKKAADAANSTDSEADESRCLDAFEQLKKFPVNYQILVSTQVGKRLKVLTKHPRKKIRAFAVDLIEIWKDIIIKETTRTKNGSSHNNVEMAKAEKVQKAHSVKVEKVSKADTVKIEKTDKNGTSSSDNVKKVQVSDVKNEKAVSAANVKVEKLAKDEKQASAMKKASPSPAAPPKLKTMIKSNDAMRDKIREILQEAFSKVSGEADETNMDQVNACDPIRVAVTVESVLFEKWGPSNGAQKVKYRSLMFNLKDPNNPDFRRKVLLGEFQPERLINMSTADMASDQRKQENEKLKQKALFECERGQQPKATTDQFKCGRCGQRKCTYYQMQTRSADEPMTTYVTCVACNNRWKFC 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa09g0793 476 Pfam Transcription factor S-II (TFIIS) 436 474 IPR001222 GO:0003676|GO:0006351|GO:0008270
Bisa09g0793 476 ProSitePatterns Zinc finger TFIIS-type signature. 438 473 IPR001222 GO:0003676|GO:0006351|GO:0008270
Bisa09g0793 476 SUPERFAMILY Zinc beta-ribbon 415 474 - -
Bisa09g0793 476 CDD Zn-ribbon_TFIIS 429 475 - -
Bisa09g0793 476 FunFam Probable Transcription elongation factor S-II 405 476 - -
Bisa09g0793 476 NCBIfam transcription elongation factor S-II 127 476 IPR006289 GO:0003676|GO:0005634|GO:0006368
Bisa09g0793 476 SUPERFAMILY Elongation factor TFIIS domain 2 294 406 IPR036575 GO:0006351
Bisa09g0793 476 SMART mid_6 310 414 IPR003618 GO:0006351
Bisa09g0793 476 Pfam Transcription factor S-II (TFIIS), central domain 305 422 IPR003618 GO:0006351
Bisa09g0793 476 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 112 209 IPR035441 -
Bisa09g0793 476 ProSiteProfiles TFIIS N-terminal domain profile. 121 197 IPR017923 -
Bisa09g0793 476 Gene3D - 405 476 - -
Bisa09g0793 476 SMART TFS2_5 119 196 IPR003617 GO:0005634
Bisa09g0793 476 MobiDBLite consensus disorder prediction 278 298 - -
Bisa09g0793 476 Pfam TFIIS helical bundle-like domain 147 194 IPR017923 -
Bisa09g0793 476 ProSiteProfiles Zinc finger TFIIS-type profile. 434 474 IPR001222 GO:0003676|GO:0006351|GO:0008270
Bisa09g0793 476 SMART Cys4_2 436 475 IPR001222 GO:0003676|GO:0006351|GO:0008270
Bisa09g0793 476 ProSiteProfiles TFIIS central domain profile. 308 431 IPR003618 GO:0006351
Bisa09g0793 476 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 111 211 IPR035441 -
Bisa09g0793 476 PANTHER TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN 130 476 - -
Bisa09g0793 476 Gene3D - 296 404 IPR036575 GO:0006351
Bisa09g0793 476 CDD TFIIS_I 134 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa09g0793 Bisa-ChrBisa09 11441213 11444315 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Bisa09g0793 TFIIS_M 1.3e-32 No_clan