Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa09g0782 ATGGCTCTTCATCATCGTTCTCGCCGCCTTCTGCTGGACTCAGATTCAGCCCCGTCGGCACCAGATAACGATTTATACAGGACAAGGGTGACGTACACAAGCGACGCCAATTTCGACACCAACATGGTGATTATACTAGCAGCCTTGCTCTGTGCCTTGATATGCGCTCTGGGGCTGAACTCAATCGTGCGGTGCGCTCTGAGATGCAGCCGGAGGCTTTCTTCCGAGACACCAGACGAGGCGGCGGCGCGTATGGCCGCGAAGGGGATGAAGAAGAGCGCGTTGCGTCAGATCCCAATCGCGGTGTATGGTTCTTCAGGGACTGAAATTGCAGACACGGATTGTCCGATTTGCCTGGGGGAGTTCATGGACGGCGAGAAAGTGAGGGTGCTTCCAAAATGCAACCATGGCTTCCATGCTAAGTGTATAGACACGTGGCTGCTTTCTCATTCCTCTTGCCCTACTTGCAGGCAGTCTCTGCTTCACCCACCTGTCGTTTCTGAAGCTGCTTAA 513 0.5419 MALHHRSRRLLLDSDSAPSAPDNDLYRTRVTYTSDANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRLSSETPDEAAARMAAKGMKKSALRQIPIAVYGSSGTEIADTDCPICLGEFMDGEKVRVLPKCNHGFHAKCIDTWLLSHSSCPTCRQSLLHPPVVSEAA 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa09g0782 170 CDD RING-H2_EL5-like 114 157 - -
Bisa09g0782 170 SMART ring_2 115 156 IPR001841 -
Bisa09g0782 170 SMART FANCL_C_2 111 169 - -
Bisa09g0782 170 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 76 162 IPR013083 -
Bisa09g0782 170 ProSiteProfiles Zinc finger RING-type profile. 115 157 IPR001841 -
Bisa09g0782 170 FunFam RING-H2 finger protein ATL72-like 81 161 - -
Bisa09g0782 170 PANTHER RING-H2 FINGER PROTEIN ATL78 6 162 IPR044602 GO:0016567|GO:0016740
Bisa09g0782 170 Pfam Ring finger domain 114 157 IPR001841 -
Bisa09g0782 170 SUPERFAMILY RING/U-box 108 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa09g0782 Bisa-ChrBisa09 11356492 11357004 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa09g0782 9 161 C3H Transcription Factor Family AT3G10910 57.764 3.64e-58 178