Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa09g0738 ATGCGCGACATTCGAGGTTTCAGACCTTTTATAGATTTCTTCACTACCTTGATCCAACTTCGCTTTCTGGAGCCTGAGCTAGCTGCTTTTCAGTTAGTAAGCAATTACCTTTTAGCTGCTGCAGAAGCTTATTGTAAGACATCGCCAAGTCAATTAGCTGTTAGAATCAATGACCCAGAGAAAGAGACAATTACGTCAATTGAATCATCCCTTCAATTCTTACCGAGATTCTATCAACATATTAACTTCCTCACATTGTTCTATATAGCATTTGAGGCAATTCTCTTTGGCTCATGGCAACCTCTAGAGTCCATAACAATTACGGGAGGAACTGTGGCCTTACATTTTAAAGATAATAACTATGTGGTTATGGAGAAAGGCCCTATGTCTGACATTCGGATAAAATCAAGGAAAGCTACTACATCAGATTGCTCCTGCTTTTTAAGACCTGGAGTTGACATATGTGTGCTCAGCTCTGATGGAAATAGTCTCAATCCTGTTTGGGCCGATGCTAGAATAAGTTCTATACAGAGAAAGCCACATGAATCTGAGTGTTCATGTCAGTATTATGTCAACTTCTATGTTACTCAAGGATGTCTTGGTACAGAGGTAAGAACTCTTAGTAAGGAGATTAAAGTATTTGGAATAAATCAAATTTCCATCCTTCAGAAGCTTGAGCATAGTCCTTCTGAAGATCAGCACTATCGGTGGGATTCATCGGAGGACTGCCATGCAGTACCACAAACTAAGTTGTTTTTAGGGAAATTTTTATCTGATATTTCATGGTTACTAGTTGCATCAGTTATAAAGCAGGTTTCGTTCTGCGTGAGATCTGTTGGTAACAAGATTGTGTATCAAATTTTGGGAGGTGATAATAATTTCTCACAGTTCAACTCTGATTCTCAATTAACAGTTGTAAATTTCAGAGTAGACAATAATGGCATGTTAGTACCAATTGTTTCCCAAATTGTTTCATCAGAGACCAATAAGGTTGACCATGCACATGATTCCCATGAAGAAGAAGTGACTCCATCTTATAATCCTGAGGGTTTGCGTCGTTCCAAACGTAGGAATGTACAACCTGAGCGTTATCTTGGTTGTGATGATAATTTTGAGTTGGATGTTGGTTTTGTTCGAACCAGGCCATACAAGATGATAGACACTCGAAAAGATGATGACGAAGATGATGAATTGGCAATGCCATTATCACGCCTGTTTTGTTTGCAAGGAAGGACTGAAGTGAACGATGGTGACTGTGGACAAAAGTTCAATCAGGTGAACTCCTGCAATAAGGTTACGGTGTACAAAAGGAAGGGTAGACTTAGGGAGGTGAAGTCAGGTGATGCTGATAATAATGATAGTCAATCTCAACTTGCTATTGTTCCTGTTCCTGATAACAATGAACACGAGCCGCTAGCCATTAAGTTTTATGATCCCCAAGCCAAGGTTACTAAATATTATGCACGCAAAAATGTTCATACTCCTACCAAAAATTATCACTTGACGGGTAGCCCTGAACCAAAGAGGAACAATATTGATCTGTTAGCTTTTGAACCATATAATCATCATTCAAAGATTCCTGATCTTGAAAATTATGCAGAAGAGATTGATGATATTCCTTCCGGACATCATTATTATGGCAGCCCTAAATTTGGGAAGAAGAATTCATTAGACTTGGATGATACGGATAATATGGCTTTCGAAAGCAAATGGGAAGGGATACCTTCCAACAAAGGAGTTCAAGGGAGAAAATACCATTCGATATATTCAAGAAGTAGACAACCTGGTGAAGAGAGAACATATAAAGATAGATCTTTAAGTGCAGGAGCCTACAAGGAATTGATAGATTCATTCTTGAAGAATATAGATACAAAACCATCCAAAGCAGAGCCACCTATTACTGACCAGTGGACACAATTCAAGGAAACAAACAACAGGGAAACAGAGGCATCCCAAATAGAGGTTACAGAAGAAATCGATGAACTTGATATGTTGTGGAGAGAAATGGAAGTTTCATTGGCATCAAGTTATCTTGAGGAAGACACAGAGGGTTCAAATGCTGCGGTTTTTGCTGAGGCTTGGGAAAAATCCAATAAACTTTGTCGACATGAGTATAGACTGAGTGAAGAAATTGGAATATATTGCCTTAGATGTGGCTTTGTCAGCACTGAGATAAAAGATGTTTCACCTCCCTTTATGGAACGTTCAATGTGGTACCAGGAGGAGAAGCATTGCAATGGAGAAGTTTCAGAACCAGAACCAAAGACTGATGAAGATGATTGTTTCCGTCTTTTATTGACTCATGCTTTGCTTGACGAACCTATATCTGAAGAAAACGATAATGTTTGGGCATTAATTCCTGAACTTAGATGGAAGATGCACATCCACCAAAAAAAAGCTTTCGAATTTCTTTGGCAAAATATTGCAGGGTCCATGGACCCAGCACTTATGGAAGCAGCAGCCAAAAGAAGAGGCGGTTGTGTGATATCTCATTCTCCTGGAGCTGGAAAAACTTTCCTTATTATTGCATTTCTTGTTAGCTACTTGAAGTTATTCCCGGGAAAGCGTCCACTGGTTCTTGCTCCCAAGACAACACTTTATACGTGGTATAAAGAATTTATTAAATGGAAAATTCCTATACCAGTGTATCTGATTCACGGTCGTAGAACCTACAGAGTATTTAAGCAGAATACAGTGGTTTTTCATGGAGGTCCAAAGCCTACCGACGATGTCAAGCATATTCTGGATTGCCTGGAAAAGATACAAAAGTGGCATGCCCACCCAAGTGTTCTAGTCATGGGTTATTCTTCATTTTTAACATTGATGAGAGAGGATTCAAAGTTCTCTCACAGAAAGTATATGGCTAAAGTACTAAGGGAAAGTCCCGGTATCCTGATACTGGACGAAGGGCACAATCCTAGAAGCACAAAATCGAGGTTGAGGAAAGGTTTGATGAAAGTACAGACAGAGTTGAGAATATTACTTTCAGGTACATTGTTTCAGAACAATTTCTGCGAATACTTTAATACTCTCTGCTTGGCAAGGCCAAAGTTTGCTCATGAAGTACTGAAGGAACTAGACCCAAAATACAAGAGGAAAAAGAAAGGAACAGAAAAAGCACCTCATTTAATAGAGGCACGAGCTAGAAAATTCTTCTTGGATAATATCGCAAAAAAAATTGACTCAAACAATGGCAAGGAGAGAAGGAAGGGGCTAAACATGTTGAGAAATATCACAAGTGGTTTCATTGATGTTTATGAAAGTGGTGGTTCTGACAATCTTCCTGGTTTACAAATATACACGTTGTTGATGAATACCACTGATATACAACATGAGATGTTGAAGAAACTCCAGCGGAAAATGGCTGGGTGCAATGGATATCCGTTGGAGTTAGAGCTTTTGATAACCCTTGGATCAATACATCCTTGGCTAATCAAGACAGCTGTATGTGCTGAGAAGTTTTTCTCTATGGAGAAATTAATGGAGCTAGAGAACTACAAGTTTGATCTAAAAAAAGGATCAAAAGTGAGATTTGTTTTGAGCCTGGTCTATCGCGTCGTCAGGAACGAGAAGATTCTTATATTCTGCCACAATATTGCACCTGTGAGGTTATTTACAGAGTTGTTTGAGAGGTTCTTTGGATGGCAAAGAGGTCGAGAAATTTTGGCACTTACTGGGGAGCTAGAGCTCTTCGAACGAGGAAGAGTGATGGATAAGTTCGAGGATCCTGGTGGAGCATCGAAGATACTCCTTGCTTCAATTTCATCTTGTGCTGAGGGCATTAGTCTGACAGCAGCCTCTCGGGTGATCTTGTTGGACTCTGAATGGAATCCATCGAAGACAAAGCAGGCTGTAGCACGGGCTTTTCGTCCTGGTCAGCAGAAGATGGTTTATGTGTATCAACTGCTGGCAACAGGCACGTTGGAGGAAGACAAGTATCGAAGAACCACTTGGAAAGAGTGGGTTTCAAGCATGATTTTCAGTGAAGATTTTGTGCAGGACCCTTCCAGATGGCAAGCTGAAAAGATTGAAGACGATATACTTCGGGAAATGGTTGAGGAAGACCGGTCTAATTCATTCCATATGATTATGAAGAATGAAAAGGCATCCAAAAGCTGA 4119 0.3986 MRDIRGFRPFIDFFTTLIQLRFLEPELAAFQLVSNYLLAAAEAYCKTSPSQLAVRINDPEKETITSIESSLQFLPRFYQHINFLTLFYIAFEAILFGSWQPLESITITGGTVALHFKDNNYVVMEKGPMSDIRIKSRKATTSDCSCFLRPGVDICVLSSDGNSLNPVWADARISSIQRKPHESECSCQYYVNFYVTQGCLGTEVRTLSKEIKVFGINQISILQKLEHSPSEDQHYRWDSSEDCHAVPQTKLFLGKFLSDISWLLVASVIKQVSFCVRSVGNKIVYQILGGDNNFSQFNSDSQLTVVNFRVDNNGMLVPIVSQIVSSETNKVDHAHDSHEEEVTPSYNPEGLRRSKRRNVQPERYLGCDDNFELDVGFVRTRPYKMIDTRKDDDEDDELAMPLSRLFCLQGRTEVNDGDCGQKFNQVNSCNKVTVYKRKGRLREVKSGDADNNDSQSQLAIVPVPDNNEHEPLAIKFYDPQAKVTKYYARKNVHTPTKNYHLTGSPEPKRNNIDLLAFEPYNHHSKIPDLENYAEEIDDIPSGHHYYGSPKFGKKNSLDLDDTDNMAFESKWEGIPSNKGVQGRKYHSIYSRSRQPGEERTYKDRSLSAGAYKELIDSFLKNIDTKPSKAEPPITDQWTQFKETNNRETEASQIEVTEEIDELDMLWREMEVSLASSYLEEDTEGSNAAVFAEAWEKSNKLCRHEYRLSEEIGIYCLRCGFVSTEIKDVSPPFMERSMWYQEEKHCNGEVSEPEPKTDEDDCFRLLLTHALLDEPISEENDNVWALIPELRWKMHIHQKKAFEFLWQNIAGSMDPALMEAAAKRRGGCVISHSPGAGKTFLIIAFLVSYLKLFPGKRPLVLAPKTTLYTWYKEFIKWKIPIPVYLIHGRRTYRVFKQNTVVFHGGPKPTDDVKHILDCLEKIQKWHAHPSVLVMGYSSFLTLMREDSKFSHRKYMAKVLRESPGILILDEGHNPRSTKSRLRKGLMKVQTELRILLSGTLFQNNFCEYFNTLCLARPKFAHEVLKELDPKYKRKKKGTEKAPHLIEARARKFFLDNIAKKIDSNNGKERRKGLNMLRNITSGFIDVYESGGSDNLPGLQIYTLLMNTTDIQHEMLKKLQRKMAGCNGYPLELELLITLGSIHPWLIKTAVCAEKFFSMEKLMELENYKFDLKKGSKVRFVLSLVYRVVRNEKILIFCHNIAPVRLFTELFERFFGWQRGREILALTGELELFERGRVMDKFEDPGGASKILLASISSCAEGISLTAASRVILLDSEWNPSKTKQAVARAFRPGQQKMVYVYQLLATGTLEEDKYRRTTWKEWVSSMIFSEDFVQDPSRWQAEKIEDDILREMVEEDRSNSFHMIMKNEKASKS 1372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa09g0738 1372 Pfam SNF2-related domain 807 1034 IPR000330 GO:0005524|GO:0140658
Bisa09g0738 1372 Gene3D - 1095 1372 IPR027417 -
Bisa09g0738 1372 Pfam Helicase conserved C-terminal domain 1175 1291 IPR001650 -
Bisa09g0738 1372 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1092 1354 IPR027417 -
Bisa09g0738 1372 SMART helicmild6 1203 1292 IPR001650 -
Bisa09g0738 1372 SMART ultradead3 789 1033 IPR014001 -
Bisa09g0738 1372 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 818 1017 IPR014001 -
Bisa09g0738 1372 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 123 1370 IPR044567 GO:0080188
Bisa09g0738 1372 Gene3D - 767 1058 IPR038718 -
Bisa09g0738 1372 CDD SF2_C_SNF 1174 1303 - -
Bisa09g0738 1372 MobiDBLite consensus disorder prediction 330 354 - -
Bisa09g0738 1372 CDD DEXHc_ATRX-like 793 1032 - -
Bisa09g0738 1372 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1178 1339 IPR001650 -
Bisa09g0738 1372 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 757 1020 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa09g0738 Bisa-ChrBisa09 10797644 10812964 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa09g0738 1218 1310 RAD5 or RAD16-like Gene Family AT5G05130 39.362 2.06e-11 67.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Bisa09g0738 SNF2_N 7.9e-16 CL0023