Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa09g0720 ATGGACGAATCATCTCTATCTGCGATGATGATCTTTTCAGGCTTTTTACCAACTGGATCTCTGCTAGATTCGTTGATTCACATATCTAATGAAGTTGCCTCCATGGAAAAGTTCCCTTTTGTACAATTCAGAAATGTCTCATCCATGATCAGGAGGGTGAAGCTGCTTTCTTCTCTGTTCGAGGAGATTCAAGAGACTGATACCCCACTCCCTCCTTCTTCAATCCTGTGTTTCACAGAGCTCTTCTCTGTGATCAGAAGAGTGAAGCTTCTGATCCAAGAATGCAAGGAAGGCAGCTCTCTGTGGGGTCTCTTACAGTTAGAGTTCATTTCTAATCAATTCTATGTGCTTGTGAAGGAGATGGGAAGAGCCCTTGATATTCTTCCTTTGAGCTTACTTAATATAACAGCAGATATAAGAGAGCAAGTGGAGCTTCTGCACAAGCAAGCCAAAGGGGTTGATTTATTCATTGATCATCGAGAGATTCAACGAAGAGAGCAGCTTCTGCAAGTGATGGCCAACAACAACTTACTGAACAAGAAGAACAAGGGGTCTCTTGAGTTCAGGAAAGTGCAAGAAATATTAAGCAGCATTGGTTTAAGAACCCCATCAGATTATGATAGAGAAATATCAAAGCTAGAGGCTGAAGCTCAGAATCAGGCAGGCACGGGAGGATTAATTGTTGTCTCCAATATAAACAATCTCATATCTCTGGTTACCTATTCCAAATCCATGATATTCATAGATGGAGAAAACTTATATGAAGTAGACCGTAAGCCAGTAGTGTCTGCATTTACATATAAAAATTCTGATACTTTTTCGTCTTCTTCTCAGTCAACAGCACCAGTACCTAATGTTCCTGATGAATTTCGATGCCCAATTTCACTTGATTTGATGAGAGATCCAGTGATTGTATCATCAGGGCATACTTATGATCGACTTTCAATTGCCCAATGGATAAATTCGGGGCATCACACATGCCCCAAAAGTGGGCAAAGTTTAATCCACACTGCCCTAATACCCAACTACGCGTTGAAGAGCCTTGTCCAGCAATGGTGCTTCGAGAACAAAGTGCCAGTGAATGAGCCAACATCATCGTCTTCCCCAACCTCACAGGAATCAAACAACAAGGACAAATCGGACAACGCCATCGATCATATGTCTGCTAAGAAAGCAGCCGTAGATGCTGTCAAAATGACAGCAGAATTTCTAGTGGGAAAATTAGCAACTGGGTCAGCTGAAATACAGAGGCAGGCTGCATATGAGCTTCGGTTACTAGCAAAAACTGGGATGGATAATCGAAGAATCATCGCCGAGGCAGGGGCGATTCCTTTTTTAGTGACATTACTAGGATCCCATGATCCAAGAATCCAGGAACATGCAGTCACGGCGTTGTTCAACCTCTCCATTTTCGACAACAACAAGGTTTTGATCATGGCTGCGGGAGCAGTGGACAACATAATAGAAGTGCTTGAATCAGGAAAAACCATGGAGGCAAGAGAAAATGCAGCGGCAGCAATATTCAGCTTGACTATGGTTGATGATTGTAAAGTAGAAATAGGAGGTCGTCAAAGGGCCATACCTGCATTAGTAGGACTCTTGAGAGAAGGCACTTGTATTGGGAAAAGAGATGCCGCTACTGCTATTTTCAATCTTGCAGTTTACAATCCCAACAAGGCGAGAATCGTTGATGCTGGAGCTGTTCCTTTGCTTATTGACTTGCTTATGGATGACAAGGCTGGGATTACAGATGATTCTCTGGCTGTGCTTGCTTTGCTTCTGGGTTGCTCTGAAGGGCTTGAAGAGATAAAGAACAGCAGGGTTTTAGTGCCTCTTTTGATTGATCTTTTGAGGTTTGGGTCACCGAAAGGGAAGGAGAATTCTATAATGCTTTTGCTGGGACTCTGTAAGGAAGAAGGTGAGGTAGTGGCAAGGAGGTTACTGGCAAATCCACGAAGTATTCCTTCTCTACAGAGTTTGGCTACTGATGGTTCTTTAAGAGCTCGAAGAAAGGCCGATGCTTTGCTCAGACTGCTCAATAGGTGTTTCTCTCAACCTCATCATTCTCTTTGA 2073 0.4303 MDESSLSAMMIFSGFLPTGSLLDSLIHISNEVASMEKFPFVQFRNVSSMIRRVKLLSSLFEEIQETDTPLPPSSILCFTELFSVIRRVKLLIQECKEGSSLWGLLQLEFISNQFYVLVKEMGRALDILPLSLLNITADIREQVELLHKQAKGVDLFIDHREIQRREQLLQVMANNNLLNKKNKGSLEFRKVQEILSSIGLRTPSDYDREISKLEAEAQNQAGTGGLIVVSNINNLISLVTYSKSMIFIDGENLYEVDRKPVVSAFTYKNSDTFSSSSQSTAPVPNVPDEFRCPISLDLMRDPVIVSSGHTYDRLSIAQWINSGHHTCPKSGQSLIHTALIPNYALKSLVQQWCFENKVPVNEPTSSSSPTSQESNNKDKSDNAIDHMSAKKAAVDAVKMTAEFLVGKLATGSAEIQRQAAYELRLLAKTGMDNRRIIAEAGAIPFLVTLLGSHDPRIQEHAVTALFNLSIFDNNKVLIMAAGAVDNIIEVLESGKTMEARENAAAAIFSLTMVDDCKVEIGGRQRAIPALVGLLREGTCIGKRDAATAIFNLAVYNPNKARIVDAGAVPLLIDLLMDDKAGITDDSLAVLALLLGCSEGLEEIKNSRVLVPLLIDLLRFGSPKGKENSIMLLLGLCKEEGEVVARRLLANPRSIPSLQSLATDGSLRARRKADALLRLLNRCFSQPHHSL 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa09g0720 690 MobiDBLite consensus disorder prediction 360 377 - -
Bisa09g0720 690 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 525 567 IPR000225 GO:0005515
Bisa09g0720 690 SMART Ubox_2 289 352 IPR003613 GO:0004842|GO:0016567
Bisa09g0720 690 Gene3D - 541 681 IPR011989 -
Bisa09g0720 690 MobiDBLite consensus disorder prediction 360 382 - -
Bisa09g0720 690 FunFam RING-type E3 ubiquitin transferase 285 359 - -
Bisa09g0720 690 SMART arm_5 430 470 IPR000225 GO:0005515
Bisa09g0720 690 SMART arm_5 596 637 IPR000225 GO:0005515
Bisa09g0720 690 SMART arm_5 514 554 IPR000225 GO:0005515
Bisa09g0720 690 SMART arm_5 386 428 IPR000225 GO:0005515
Bisa09g0720 690 SMART arm_5 555 595 IPR000225 GO:0005515
Bisa09g0720 690 Gene3D - 372 540 IPR011989 -
Bisa09g0720 690 SUPERFAMILY RING/U-box 274 360 - -
Bisa09g0720 690 ProSiteProfiles U-box domain profile. 285 359 IPR003613 GO:0004842|GO:0016567
Bisa09g0720 690 SUPERFAMILY ARM repeat 402 679 IPR016024 -
Bisa09g0720 690 CDD RING-Ubox_PUB 287 339 IPR045210 -
Bisa09g0720 690 PANTHER U BOX DOMAIN-CONTAINING 45 684 - -
Bisa09g0720 690 FunFam RING-type E3 ubiquitin transferase 496 683 - -
Bisa09g0720 690 Pfam U-box domain 286 357 IPR003613 GO:0004842|GO:0016567
Bisa09g0720 690 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 285 360 IPR013083 -
Bisa09g0720 690 Pfam Armadillo/beta-catenin-like repeat 556 591 IPR000225 GO:0005515
Bisa09g0720 690 Pfam Armadillo/beta-catenin-like repeat 432 469 IPR000225 GO:0005515
Bisa09g0720 690 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 441 483 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa09g0720 Bisa-ChrBisa09 10586380 10588452 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa09g0720 19 685 U-box Gene Family AT3G46510 37.890 8.79e-131 399