Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa09g0697 ATGAGACCATTGCCAGCGTCAGGTGGCCAACGGGGTTGGCACGTGCCTAAGATGACCTCAGCTAACGATCACCCCCCACCGCCTTTGTCGGATTCCGACACCGACACCGACTCCGACTCCGGCCACTCTAGTTCGGAAGCCCTCCGCCACACGGACCTCTCCGACTCCATATTCAAATCCTATTTCGAATTCACCGGCCAATCATCGGTAACCGCTGCAGATCTTTCAAAGATCCAGTCTTTCCTCACCTCCTCCTCCTCCGGTGCTCTATCATGCTTGATATGCCTCGAACGCATCAGACCCTCCGACCCCACCTGGTCCTGCACCTCCCTCTGCTTCTCCGTCTTCCATCTTGTATGCATACAGAGCTGGGCGCGCCAGGCTTCCGACCTCGCTGCCGCACGGGCGACAACGCGCCTCCCTATCACGGCTGACAAGGCTGCCGAGTCTGCCACTTGGAACTGTCCCAAATGCAGGGCTGAATACTCCAAAACCCAGATCCCTAAATCCTATGTGTGTTTCTGTGGAAAATTGGAAAATCCTCCCAGTGATGATCCCTGGGTATTGCCTCATTCATGCGGTGAGGTTTGTGGTAGGCCATTGAAGCACAACTGCGGCCACCATTGCCTGTTGCTATGTCATCCGGGGCCATGTCCATCGTGCCCAAAGCTCGTCAAGGCTCGATGCTTCTGTGGGTCACACGAAGACGTCCGCCGATGTGGGTTTAAGGAGTTTTCTTGCAACAATCCTTGTTCAAAGCTCTTGGACTGTCGTGTTCACAGGTGCTCTGAGATCTGTCACGTTGGCCCGTGCCCACCTTGCCGAGCCCGTGGAGTTTTTAAGTGCCAATGCGGGCGGAAAAAGGAGGAGAGGGAGTGCTGTGATCGAATTTTTCAGTGTGATACTCCATGTGAGAAGGCGCTTAGGTGCGGGAAGCATGTTTGCCAGAAAGGTTGTCATTCTGGTGGGTGTGGCGAGTGCCCTTTCCAAGGGAAGAGAGCCTGCCCGTGTGGGAAGAGAATTTATGAAGGAATTCCTTGTGACGCTCCAGTGCAATTGTGTGGGGCGACCTGTGATAAAATGTTGAGTTGCGGATATCACAGGTGCCCTGAGCGATGCCACCGTGGGCCCTGCATTGAAACTTGCAGAACTGTTGTAAGGAAATCCTGCCGTTGCGGGAGCCTGAAAAAAGAGGTCCCTTGCTATCAAGACTTGTCATGTGAAAGGAAGTGTCAGAGGATACGCGACTGTGGACGGCATCCGTGTAAACGTCGCTGCTGTGATGGTGACTGCCCTCCGTGTTCAGAGATATGTGGCAAGAAGCTTCGATGTAAGAACCATAAATGTCCTTCTCCATGCCATAGAGGTGCCTGTGCCCCTTGTCCAATAATGGTGACAATCTCGTGTGCATGTGGTGAGACACATTTTGAGGTTCCTTGTGGCACTGAAAGGGATCAAAAGCCTCCTAAATGTCCTAAAAAATGTCCTATTAATCCTTTATGCAGGCACGCACCGATTTCCAAGCCTCACAAATGCCATTATGGTGCCTGCCCTCCTTGTCGGCTTCCTTGTGAAGAAGAGTACCCATGTGGCCACAAATGCAAATTAAGGTGTCATGGTTCTAAACCTCCTCCTAATCCAGAGTTTACACTGAAACCAAAGAAAAAGAAGACAACACAACAAAGTGAAGGTGTTCCTGGCACTCCATGCCCTCCTTGCCCAGAACTTTTGTGGAGATCATGTGTTGGTCAACACATTGGAGCTGAGAGAATGATGGTCTGCTCCGACAAATCACAGTTTTACTGTGATAATTTGTGTGGAAATCCTCTTCCATGTGGTAATCATTATTGTACTAAAACCTGTCATGCCTTGGAGAGACAATCTTCCTTGAACCCGTCACAGAGAAGTGAGCCTTGTGAAGATTGTGGTCTGCCATGCCAAAAGGTAAGAGAGCCCAGGTGTCCACATCAGTGCCCTCAGCCCTGCCATCCTGGAGAATGCCCTCCATGCAAAGTGCTCATTAAACGTTCTTGTCATTGTGGTGCGATGGTCCATGTTTTTGAGTGCATATATTACAACAGCTTGTCTGCTAAGGATCAAGAGACTGTACGTTCATGTCGTGGGCCTTGCCATAGAAAGTTGCCATATTGTACACATCTGTGCCCAGAGAGATGTCATCCTGGTCCATGCCCAAATCCTGAGAAATGCTCGAAAAAGGTCACTGTTCGTTGCAAATGTCAAACCCTGAAAAAGGAATGGCTATGTCAAGATGTTCAAGCAGCCTATCACCGTGATGGTTGCCATCCCAGAGATGTACCAAAAAATCACTTTGGAATTGGACTTATTGCTTGCAATTCTGATTGTAAGAGTAAAGTGCAGGTTGTTGAGTCAGAACTACAATTACGTAAAACTAGAGTTATGGAGGAAAAACAGCCTGTGATTGAAAAGCCAGTACCGAAACGAAGGAAAAGGCGGGAACGGGTACAAGAATCCAACCAAACAACAAAACTGCAGAAAATTGTATCCACCATGAAGCAGCTTCTTCTATATGTCTTTCTTTTTGTGGCCCTTCTCGTTGCTATGTATTATGGTTACAAGGGCCTTCTATGGCTCAATGATTGGATGAATGAAGTTGACGAGCGAAGACAAAGAAGATATTCTTTAATCTCCTAG 2673 0.4912 MRPLPASGGQRGWHVPKMTSANDHPPPPLSDSDTDTDSDSGHSSSEALRHTDLSDSIFKSYFEFTGQSSVTAADLSKIQSFLTSSSSGALSCLICLERIRPSDPTWSCTSLCFSVFHLVCIQSWARQASDLAAARATTRLPITADKAAESATWNCPKCRAEYSKTQIPKSYVCFCGKLENPPSDDPWVLPHSCGEVCGRPLKHNCGHHCLLLCHPGPCPSCPKLVKARCFCGSHEDVRRCGFKEFSCNNPCSKLLDCRVHRCSEICHVGPCPPCRARGVFKCQCGRKKEERECCDRIFQCDTPCEKALRCGKHVCQKGCHSGGCGECPFQGKRACPCGKRIYEGIPCDAPVQLCGATCDKMLSCGYHRCPERCHRGPCIETCRTVVRKSCRCGSLKKEVPCYQDLSCERKCQRIRDCGRHPCKRRCCDGDCPPCSEICGKKLRCKNHKCPSPCHRGACAPCPIMVTISCACGETHFEVPCGTERDQKPPKCPKKCPINPLCRHAPISKPHKCHYGACPPCRLPCEEEYPCGHKCKLRCHGSKPPPNPEFTLKPKKKKTTQQSEGVPGTPCPPCPELLWRSCVGQHIGAERMMVCSDKSQFYCDNLCGNPLPCGNHYCTKTCHALERQSSLNPSQRSEPCEDCGLPCQKVREPRCPHQCPQPCHPGECPPCKVLIKRSCHCGAMVHVFECIYYNSLSAKDQETVRSCRGPCHRKLPYCTHLCPERCHPGPCPNPEKCSKKVTVRCKCQTLKKEWLCQDVQAAYHRDGCHPRDVPKNHFGIGLIACNSDCKSKVQVVESELQLRKTRVMEEKQPVIEKPVPKRRKRRERVQESNQTTKLQKIVSTMKQLLLYVFLFVALLVAMYYGYKGLLWLNDWMNEVDERRQRRYSLIS 890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa09g0697 890 CDD RING-CH-C4HC3_NFXL1 90 159 - -
Bisa09g0697 890 MobiDBLite consensus disorder prediction 1 47 - -
Bisa09g0697 890 CDD NF-X1-zinc-finger 247 295 - -
Bisa09g0697 890 CDD NF-X1-zinc-finger 354 403 - -
Bisa09g0697 890 ProSiteProfiles Zinc finger RING-type profile. 92 159 IPR001841 -
Bisa09g0697 890 Pfam NF-X1 type zinc finger 205 222 IPR000967 GO:0005634|GO:0008270
Bisa09g0697 890 Pfam NF-X1 type zinc finger 718 736 IPR000967 GO:0005634|GO:0008270
Bisa09g0697 890 Pfam NF-X1 type zinc finger 310 328 IPR000967 GO:0005634|GO:0008270
Bisa09g0697 890 Pfam NF-X1 type zinc finger 259 275 IPR000967 GO:0005634|GO:0008270
Bisa09g0697 890 Pfam NF-X1 type zinc finger 612 622 IPR000967 GO:0005634|GO:0008270
Bisa09g0697 890 Pfam NF-X1 type zinc finger 656 671 IPR000967 GO:0005634|GO:0008270
Bisa09g0697 890 Pfam NF-X1 type zinc finger 417 435 IPR000967 GO:0005634|GO:0008270
Bisa09g0697 890 Pfam NF-X1 type zinc finger 438 462 IPR000967 GO:0005634|GO:0008270
Bisa09g0697 890 Pfam NF-X1 type zinc finger 511 521 IPR000967 GO:0005634|GO:0008270
Bisa09g0697 890 Pfam NF-X1 type zinc finger 364 382 IPR000967 GO:0005634|GO:0008270
Bisa09g0697 890 CDD NF-X1-zinc-finger 642 683 - -
Bisa09g0697 890 CDD NF-X1-zinc-finger 407 455 - -
Bisa09g0697 890 CDD NF-X1-zinc-finger 300 347 - -
Bisa09g0697 890 SMART znfxneu3 205 223 IPR000967 GO:0005634|GO:0008270
Bisa09g0697 890 SMART znfxneu3 612 648 IPR000967 GO:0005634|GO:0008270
Bisa09g0697 890 SMART znfxneu3 417 436 IPR000967 GO:0005634|GO:0008270
Bisa09g0697 890 SMART znfxneu3 654 672 IPR000967 GO:0005634|GO:0008270
Bisa09g0697 890 SMART znfxneu3 364 384 IPR000967 GO:0005634|GO:0008270
Bisa09g0697 890 SMART znfxneu3 501 522 IPR000967 GO:0005634|GO:0008270
Bisa09g0697 890 SMART znfxneu3 717 738 IPR000967 GO:0005634|GO:0008270
Bisa09g0697 890 SMART znfxneu3 530 575 IPR000967 GO:0005634|GO:0008270
Bisa09g0697 890 SMART znfxneu3 444 463 IPR000967 GO:0005634|GO:0008270
Bisa09g0697 890 SMART znfxneu3 257 276 IPR000967 GO:0005634|GO:0008270
Bisa09g0697 890 SMART znfxneu3 310 329 IPR000967 GO:0005634|GO:0008270
Bisa09g0697 890 SUPERFAMILY RING/U-box 91 164 - -
Bisa09g0697 890 CDD NF-X1-zinc-finger 434 482 - -
Bisa09g0697 890 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 58 526 IPR034078 GO:0003700
Bisa09g0697 890 CDD NF-X1-zinc-finger 193 241 - -
Bisa09g0697 890 MobiDBLite consensus disorder prediction 545 566 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Bisa09g0697 zf-NF-X1 7.2 No_clan