Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa09g0651 ATGTCTTTTATCGGCACCCAACAGAAATGCAAGGCTTGTGAGAAAACGGTTTATCCTGTTGATCAGCTATCTGCCGATGGCACTGCTTATCATAAGGCTTGCTTCAGGTGCTCTCACTGCAAAGGAACATTAAAGCTAAGCAACTATTCCTCAATGGAAGGTGTTCTTTATTGCAAGCCTCATTATGAGCAGCTATTCAAGGAGACAGGCAGCTTCAGCAAGAATTTCCAGTCACCTGCAAAGTTAGCTGAGAAGACAACTCCTGAGCTGACAAGGTCTCCTAGTAAAGCTGCTAGCATGTTTTCTGGGACACAGGAAAAGTGTGCTACATGTGGCAAAACTGCTTATCCGTTGGAGAAGGTAACAGTGGAGGGCCAGTCCTATCACAAATCGTGTTTCAAGTGTTCACATGGTGGCTGTCCGATATCGCCATCAAATTATGCAGCCCTTGAGGGCATTTTGTATTGCAAGCACCATTTTTCCCAGCTTTTTAAGGAGAAGGGGAGCTATAATCATCTAATCAAGTCTGCATCAATAAAACGGACAGCAGCCGCTGTTCCAGAATCTTAA 570 0.4456 MSFIGTQQKCKACEKTVYPVDQLSADGTAYHKACFRCSHCKGTLKLSNYSSMEGVLYCKPHYEQLFKETGSFSKNFQSPAKLAEKTTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEKVTVEGQSYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASIKRTAAAVPES 189
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Bisa09g0651 189 CDD LIM2_SF3 108 168 - -
Bisa09g0651 189 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 100 133 - -
Bisa09g0651 189 FunFam LIM domain and actin-binding 1 102 172 - -
Bisa09g0651 189 ProSiteProfiles LIM domain profile. 106 166 IPR001781 -
Bisa09g0651 189 SMART lim_4 107 159 IPR001781 -
Bisa09g0651 189 SMART lim_4 9 61 IPR001781 -
Bisa09g0651 189 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 134 173 - -
Bisa09g0651 189 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Bisa09g0651 189 Pfam LIM domain 108 163 IPR001781 -
Bisa09g0651 189 Pfam LIM domain 10 65 IPR001781 -
Bisa09g0651 189 Gene3D Cysteine Rich Protein 4 74 - -
Bisa09g0651 189 Gene3D Cysteine Rich Protein 102 172 - -
Bisa09g0651 189 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Bisa09g0651 189 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Bisa09g0651 189 FunFam LIM domain and actin-binding 1 4 74 - -
Bisa09g0651 189 CDD LIM1_SF3 6 68 - -
Bisa09g0651 189 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Bisa09g0651 189 PANTHER OS06G0237300 PROTEIN 5 109 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Bisa09g0651 Bisa-ChrBisa09 9611949 9613771 Dispersed/Wgd
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Bisa09g0651 LIM 3.3e-11 CL0167