LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa09g0643	ATGACTGAAGGAGACCGCACCCACTCTGCCTCCCCCTCCCCCTCCCTCGAGCCTCCCCACAATGGCGTCGCCGACTCCGAAACCGCCGCCGCAGCTGACGCCGAACCTCTGGCCGGCGATTCCGACTTGTCGGGCGCTGGAGACGGAAACGTGGCCGGTAGAGTGAAGGGACCATGGTCTCCGGAGGAGGACGTCGTTCTCAGTCGATTGGTTAGCAAGTTTGGGGCAAGGAATTGGAGCATGATCGCGCGAGGAATACCCGGTCGCTCGGGCAAGTCCTGCCGTCTCCGGTGGTGTAATCAGCTCGACCCGTGTGTTAAACGCAAGCCCTTTACTGAGGAAGAGGACCATATCATAGTTGCAGCCCATGCGATTCATGGAAACAAATGGGCAGCAATTGCAAGGCTTCTTTCAGGTAGGACGGATAATGCAATAAAAAATCACTGGAATTCTACACTTAAGCGTAGGTGCATGGATTTGGGAAGATATGTCCCAGTGGGTGCAGGTGCAATGGAGGATGGCAGCGCTGAGGCCTTTGACAAAACAAAGGCATCCTCTGAAGAAACCTTGTCAGTAGGGGATATTAATTCATTGAATCCTGAAGAAGCTAAAAATGTCACGATGGATGGTGGAATTCAGCAGAATGAAGACAATACTCAAAGAAAAGATGGTGCTGAAGAAAAAGAGGAACATCCTACACTTTGTCGACCTGTTGCACGAGTTAGTGCATTTAATGTTTATAATCCTCTAAGCAGGCCAACAATTGGGTCCACATATTCAAAGATGGTCCCGATGCAGGGCCCTCTGGTCCAATCATCCAAAACAGAAGCTGGAGCCTGCAAGCTATTTGATGACATTGGGTGTGAGCCCATGGTTCCATTGCAATGTGGTCGGGGCTGCTGTTCAACAGGTTCAGGGGGAAGCCATCCTCATGGTTCACTACTAGGTCCTGAGTTTGTTGACTATTTGGAGCCGCCCTCTTTCTCAAGTCATGAATTGATCTCTATAGCTACAGATTTGAACAATATTGCTTGGATCAAGAGTGGCCTTGAGAATCATGGCGCCAGAGTCCCTGAGAATGCAGCTAACTTGACAGCTTCCCAAGGTGTTGCTACTGCCTTTCAAAGTGGCTTCTTTGAGGAGGGAGCAAGCAATTTTGTGGGTTTGATTCAGGATGTGTTACCAACGCAGATGCCCAGTCATCCATTTCCAATGCCTGCGGAAGTTTGA	1230	0.5024	MTEGDRTHSASPSPSLEPPHNGVADSETAAAADAEPLAGDSDLSGAGDGNVAGRVKGPWSPEEDVVLSRLVSKFGARNWSMIARGIPGRSGKSCRLRWCNQLDPCVKRKPFTEEEDHIIVAAHAIHGNKWAAIARLLSGRTDNAIKNHWNSTLKRRCMDLGRYVPVGAGAMEDGSAEAFDKTKASSEETLSVGDINSLNPEEAKNVTMDGGIQQNEDNTQRKDGAEEKEEHPTLCRPVARVSAFNVYNPLSRPTIGSTYSKMVPMQGPLVQSSKTEAGACKLFDDIGCEPMVPLQCGRGCCSTGSGGSHPHGSLLGPEFVDYLEPPSFSSHELISIATDLNNIAWIKSGLENHGARVPENAANLTASQGVATAFQSGFFEEGASNFVGLIQDVLPTQMPSHPFPMPAEV	409

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa09g0643	409	CDD	SANT	110	153	IPR001005	-
	Bisa09g0643	409	Gene3D	-	55	107	-	-
	Bisa09g0643	409	PANTHER	MYB PROTEIN-RELATED	56	215	-	-
	Bisa09g0643	409	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	103	157	IPR017930	-
	Bisa09g0643	409	CDD	SANT	58	100	IPR001005	-
	Bisa09g0643	409	ProSiteProfiles	Myb-like domain profile.	103	153	IPR001005	-
	Bisa09g0643	409	MobiDBLite	consensus disorder prediction	206	233	-	-
	Bisa09g0643	409	ProSiteProfiles	Myb-like domain profile.	56	102	IPR001005	-
	Bisa09g0643	409	MobiDBLite	consensus disorder prediction	1	58	-	-
	Bisa09g0643	409	MobiDBLite	consensus disorder prediction	1	16	-	-
	Bisa09g0643	409	FunFam	MYB transcription factor	56	107	-	-
	Bisa09g0643	409	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	54	102	IPR017930	-
	Bisa09g0643	409	Gene3D	-	110	156	-	-
	Bisa09g0643	409	MobiDBLite	consensus disorder prediction	219	233	-	-
	Bisa09g0643	409	SUPERFAMILY	Homeodomain-like	53	149	IPR009057	-
	Bisa09g0643	409	SMART	sant	55	104	IPR001005	-
	Bisa09g0643	409	SMART	sant	107	155	IPR001005	-
	Bisa09g0643	409	Pfam	Myb-like DNA-binding domain	56	102	IPR001005	-
	Bisa09g0643	409	Pfam	Myb-like DNA-binding domain	108	152	IPR001005	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa09g0643	Bisa-ChrBisa09	9535465	9540868	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa09g0643	7	364	MYB Transcription Factor Family	AT3G55730	48.128	4.17e-104	312

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Bisa09g0643		Myb_DNA-binding	1.1e-13	CL0123