Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa09g0594 ATGTCTTCGGGGGTGTTCTCTTATTGGTGCTATAGATGCAGTCGCATCGTAAGGGTATCGCGGCAAGACATGGTGCTTTGTCCGGAATGTGGCGGGGGGTTTGTGGAAGAGATCGAACAACCACCTCGACCTGTCCACGTGGACTCGCGGCGACGGAGGATTCCTGCAGCTGCGATGTACATGATCGGCCAACGCCACATGTCTGATCAGAACTCGCGCCCACCGCTTCGGAGGACCCGCAGAAACGGAGGGGAGCGCTCGCCGTACAATCCGGTGATCGTGCTGCGTGGATCGCCGGATCGGTCGAGTCCCGAAGGGGGAGGAGAGAGTCGTGGGTTTGAGCTTTTTTACGACGACGGTGCCGGTTCTGGGCTTCGTCCTTTGCCTCCGAGCATGTCAGAGTTTCTTTTGGGATCTGGATTCGACAGGCTTTTGGAGCAGCTCTCTCAGATCGAAATTGGGCGATACGAGCACCCGCCAGCATCAAAAGCTGCGATTGATTCGATGCCCACAATTGAAATTGATCAGAGTCATTTGGCGACGGAATCACATTGTGCCGTTTGCAAGGAGCCTTTTGAATCAGGCTCTAATGCTAGAGAAATGCCTTGTAAACATATATACCATCCCGACTGCATTCTACCGTGGCTCGCGCTTCGTAATTCTTGCCCGGTTTGTCGCCATGAATTGCCATCTGATAATACCCAGAACAGCGACTCCACAGGACACTCCCATGCCTGGAACGATGAAGAAAATGTGGGGTTGACGATTTGGAGGCTCCCAGGAGGTGGATTTGCGGTGGGGAGATTTTCTGGTGGAAGAAGAGGTGCAGAGAGGGAGCTTCCAGTTGTTTATACAGAAATGGATGGCGGGTTTAACAATGGTGGTGAACCAAGGAGGATTTCCTGGTCTTCAAGTGGGAGTAGAGGGAGGGAGAGAGGTGGATTGCGCGGAATGTTCCACAATTGGTTTAGTTGCTTTGGAGGAGTTCGATCTCGGGACTCTCCTACTAGAGAATCTCGACATGTAAGGATTTCTTCTCTTTCGGATTCAAATACTTCTCCACATTCACGCAGGACTTGGTCTATGGATGTAAATAGTGGAACGAGATTATGGTAA 1116 0.5179 MSSGVFSYWCYRCSRIVRVSRQDMVLCPECGGGFVEEIEQPPRPVHVDSRRRRIPAAAMYMIGQRHMSDQNSRPPLRRTRRNGGERSPYNPVIVLRGSPDRSSPEGGGESRGFELFYDDGAGSGLRPLPPSMSEFLLGSGFDRLLEQLSQIEIGRYEHPPASKAAIDSMPTIEIDQSHLATESHCAVCKEPFESGSNAREMPCKHIYHPDCILPWLALRNSCPVCRHELPSDNTQNSDSTGHSHAWNDEENVGLTIWRLPGGGFAVGRFSGGRRGAERELPVVYTEMDGGFNNGGEPRRISWSSSGSRGRERGGLRGMFHNWFSCFGGVRSRDSPTRESRHVRISSLSDSNTSPHSRRTWSMDVNSGTRLW 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa09g0594 371 FunFam E3 ubiquitin-protein ligase RING1-like 147 232 - -
Bisa09g0594 371 Pfam Protein of unknown function (DUF1117) 252 350 IPR010543 -
Bisa09g0594 371 ProSiteProfiles Zinc finger RING-type profile. 185 226 IPR001841 -
Bisa09g0594 371 SUPERFAMILY RNA polymerase subunits 6 34 IPR029040 -
Bisa09g0594 371 MobiDBLite consensus disorder prediction 331 371 - -
Bisa09g0594 371 MobiDBLite consensus disorder prediction 62 112 - -
Bisa09g0594 371 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 90 230 - -
Bisa09g0594 371 SUPERFAMILY RING/U-box 165 232 - -
Bisa09g0594 371 Pfam Ring finger domain 184 226 IPR001841 -
Bisa09g0594 371 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 149 232 IPR013083 -
Bisa09g0594 371 Pfam zinc-ribbon 7 38 IPR039525 GO:0061630
Bisa09g0594 371 MobiDBLite consensus disorder prediction 345 371 - -
Bisa09g0594 371 SMART ring_2 185 225 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa09g0594 Bisa-ChrBisa09 8742202 8743317 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa09g0594 127 233 C3H Transcription Factor Family AT5G01980 42.056 9.58e-26 106