Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa09g0528 ATGACAAGAAAGAAGGTGAAGCTGGCATTCATAGCCAATGACTCTGCGAGGAAAGCAACGTACAAGAAGAGAAAGAAGGGTCTGATAAAGAAGGTCGACGAACTCACCACTCTGTGCGGGATCGAGGCTTGCGCGATCGTCTACAGTCCGTACGATTCTCAGCCGGAGATCTGGCCGTCGCCGTTCGGCGTGCAACGCGTGCTATCGAAGTTCCGGAGGATGCCCGAATTGGAGCAGAGCAAAAAGATGGTGAATCAGGAAGGGTTTTTGAAGCAGAGGATCCTGAAGGCAAAAGAGCAGCTCAAGAAACAGAGGAAGGAGAACAGGGAGAAGGAGATGACGCAGATCATGTATCAGTATCTCGGAGCCGGGAAGGTTCTTCACGGCATGACGATGGTGGATCTCAACGATCTAGCGTGGCTGATCGAGCAGAATTTGAAGGATATTAATCGGAGGATCGAGACGTTGGACAAGAGGACTCAGGGTCAGAGCCAGTGCCAGGCACAGGTGGCGGCAATGGCTGCCGCGGACGCGGCGGCGTTCAGGACCAGGGATAAAGCGAAGGTGGAACAGGTGGATGGGATGGACATCAACGGGGGCATTATGGCGCCGAAGCAGCAGTGGTTCATGGACTTGATGAATGGTGGTGGGGAGGAAACGCTGCCATTTGGAGATGTTAATCATTCTAATGCCTTTTGGCATGCATGTGTTCCACCAGTCTGCTTCTCCGGTCTTCCTCCAACAGTGCCACCATTGCTGTTGATAGTGGTGCTGCTATTCTCTCTCGATGTCGAGCCATCACCTATCACTAGCATCTCTCTGTCACCGTTGATCCTTGTCTCCCTCAAGTGGGTTCAGTTGGAGAAGATGGAGCTGGCGAAGAGTATTGAAGCCTCTGTACTCTCCCTTGCCTCTGTGCTTGCCGTCGCCTTTGTATTGAAGCCTCTGTACTCTCCTTCACCATCTTCGTCCCCCTTCTCCTCTTCGTTTTCTTCGTCGTTGGTTTGA 1008 0.5248 MTRKKVKLAFIANDSARKATYKKRKKGLIKKVDELTTLCGIEACAIVYSPYDSQPEIWPSPFGVQRVLSKFRRMPELEQSKKMVNQEGFLKQRILKAKEQLKKQRKENREKEMTQIMYQYLGAGKVLHGMTMVDLNDLAWLIEQNLKDINRRIETLDKRTQGQSQCQAQVAAMAAADAAAFRTRDKAKVEQVDGMDINGGIMAPKQQWFMDLMNGGGEETLPFGDVNHSNAFWHACVPPVCFSGLPPTVPPLLLIVVLLFSLDVEPSPITSISLSPLILVSLKWVQLEKMELAKSIEASVLSLASVLAVAFVLKPLYSPSPSSSPFSSSFSSSLV 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa09g0528 335 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Bisa09g0528 335 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Bisa09g0528 335 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bisa09g0528 335 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bisa09g0528 335 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bisa09g0528 335 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Bisa09g0528 335 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Bisa09g0528 335 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 163 - -
Bisa09g0528 335 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Bisa09g0528 335 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bisa09g0528 335 Coils Coil 87 114 - -
Bisa09g0528 335 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa09g0528 Bisa-ChrBisa09 7780117 7781973 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa09g0528 1 178 Type I MADS-box Gene Family AT5G48670 61.798 3.77e-68 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Bisa09g0528 SRF-TF 7.4e-17 No_clan