Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa09g0527 ATGTTATTGTCTTGGACAAAAAAAAGAGTTTTCCGCCGTGCCCGCAAAGGGAAGGACCTTCCCGGTGCCGGAGATTTGGACGTCGAGGTCGTCGTCCCGACGCACTTCCGGTGTCCGATCACCTTGGACTTGATGAAAGATCCGGTGACTCTGTCCACCGGGATCACCTACGACAGAGACAGCATCGAGAAGTGGATAGAATCCGGGAACCCGACATGCCCGGTCACGAACCAGCCGTTGCTTGGCTCCGACATGATCCCGAATCACGCCATCCGTAGGATGATCCAAGACTGGTGCGTGGAGCACCGATCGTACGGCATCGAGAGGATCCCCACCCCGAGAATACCAGTCACGCAGTACGAGGTTTCCGAGATCTGCGCGGGGATAATGTCGGCGGCGCAACGCGGAGACGACAACAGATGCCAACAATTGGTGAACAGGATTAAGGTTTTGGGGAGAGAGAGCGAGAGAAACAAGAAATGTATAGTGGAGAACCGGGCTGGTGTTGTATTAGCCAACGCCTTTAATTCTTTCTCGACAGATTGCATTGAGAAACACGTGGGTGTTTTAGAGGAGATTTTGGGGGTTTTAACATGGACGTTTCCGAATGGAGAAGAGGGTCGAACTTTAAAATCAACGTTGGGTTCAGAAGCCTCTTTACGTTGCATGGTTTGGTTCCTCAATAGTAAAGATCTGTCCTCAAGGCAAAACGCAGCTTTGGTGCTGAAGGAAGTGCCGTTTGAGGCGTTGGCAAAAGCTGAAGGTGTGATCGAAGCTTTGGTTAAGATGATTAAGGAGCCTGTAGGGCCTTCTGCTACAAAAGCATGTTTGAAGACAATTTTCCTCTTGGTTTCCTCGTCAGAGGATGATGATGAGAAAGAGAGGATTATTAAGAGATTTGTGGAATTGGGTTTGGTTTCGTTGTTGCTTGAAGCCCTTGTGGATGCAGAGAGAGGGATCTGCGAGAAGGCTCTGGGTGTACTTGATTGTATATGTGATTGCAGACAAGGGAAGGAAGAGGCAAAGGCAAATGCTTTGACGTTGCCTCTTGTGGTGAAGAAGATTTTGAGGGTATCAGGGTTGGCTTCAGATTTCGGAGTGTCTGTTCTTTGGAAGCTTTGTGACGAAGACGAGAGCGACAAGGAAGGTGTTGCAATGGAGGTACTTCAAGTGGGAGCGTTTCAGAAGCTTCTAGTTCTGTTGCAGGTTGGGTGTGGTGAGACCACGAAGGAGAAGGCTACTGAGTTGTTGAAATTGTTGAACGGTTTCAGAAGCACAATCAGAGAGGAGTGTGTTGATTCGTCTTTGGATTTGAAGTACCTCAAAAAGCCCTTTTGA 1338 0.4888 MLLSWTKKRVFRRARKGKDLPGAGDLDVEVVVPTHFRCPITLDLMKDPVTLSTGITYDRDSIEKWIESGNPTCPVTNQPLLGSDMIPNHAIRRMIQDWCVEHRSYGIERIPTPRIPVTQYEVSEICAGIMSAAQRGDDNRCQQLVNRIKVLGRESERNKKCIVENRAGVVLANAFNSFSTDCIEKHVGVLEEILGVLTWTFPNGEEGRTLKSTLGSEASLRCMVWFLNSKDLSSRQNAALVLKEVPFEALAKAEGVIEALVKMIKEPVGPSATKACLKTIFLLVSSSEDDDEKERIIKRFVELGLVSLLLEALVDAERGICEKALGVLDCICDCRQGKEEAKANALTLPLVVKKILRVSGLASDFGVSVLWKLCDEDESDKEGVAMEVLQVGAFQKLLVLLQVGCGETTKEKATELLKLLNGFRSTIREECVDSSLDLKYLKKPF 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa09g0527 445 Gene3D - 126 430 IPR011989 -
Bisa09g0527 445 FunFam RING-type E3 ubiquitin transferase 32 103 - -
Bisa09g0527 445 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 23 109 IPR013083 -
Bisa09g0527 445 CDD RING-Ubox_PUB 33 85 IPR045210 -
Bisa09g0527 445 SUPERFAMILY RING/U-box 29 108 - -
Bisa09g0527 445 ProSiteProfiles U-box domain profile. 31 105 IPR003613 GO:0004842|GO:0016567
Bisa09g0527 445 SUPERFAMILY ARM repeat 148 420 IPR016024 -
Bisa09g0527 445 PANTHER WDSAM1 PROTEIN 29 423 IPR045185 GO:0061630
Bisa09g0527 445 Pfam U-box domain 32 103 IPR003613 GO:0004842|GO:0016567
Bisa09g0527 445 SMART Ubox_2 35 98 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa09g0527 Bisa-ChrBisa09 7747695 7749032 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa09g0527 29 445 U-box Gene Family AT5G37490 50.236 7.68e-129 378