Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa09g0506 ATGACAATTGGTGAGGAATCCTTAGCATCGGTTCCATTTGATCGAGCTGTCGAACAGGCAATTTTATCCATAAAGAAAGGTGCATACTTACTGAAGTGTGGACGTCGAGGAAAGCCCAAGCTCTGCCCATTTAGACTTTCTCCGGATGAGAAAATTTTGATTTGGTATTCTGGGCATCAGGAAAAGCATTTGCAATTGAGTGCAGTTACAAAAATTGTTCAAGAGCAGGGAAATATAAGGTCTCATAGGCAAAGCCAACCTGAGGAGTGCCATTCATTTTCGCTAATCTATGCTAATGGTGAACGCTCACTTAATTTGATATGCAAGGACAAAGCACAGGCTGCTTCTTGGTTAGCAGGCTTGAGAGCTGTTATTTCTAGGTCCCAGCACTCAAGATCTTTAAGTAGTTTAAGAAGCTGCAAAGGGTTGCAGAGTTGTGTCAGTAGTCCAGCTGGAATCTTTCGGAGAAAGAAAAAACTTGGTCTTGTGGTGGAGGATACAGCTGAATATACTCAGGTACACAGCTTATGTGCAAGTCCCGTTTTGTCACTTTCAGAAAGGTGTTATTCTGAGGGTTTATCATATGCTTCTGATAATAGCTTTTGTTCATCGGAGCCTTTCCTACACAATACTCAGAGGATAACAGATATTTCAGTCCCAAGTTCTCCGTGTATCGATCCTGATTTTCTTAATAAGAGTAGATCAGCATATTCTGACACACAGCACCGGAAGAATTTGCCCTATAGGTGTCTGCCTCCTTCTACCTCCCCACATGTAGGAAACAAAAATGTACTGAAGGATGTGATGATCTGGGGTGGAGGGATTGTAGGGAGTGGTAATAACAGGCTTGCCAATCAACAGAATGTTCATACTGTATTGCCAAAGTTGCTGGAATCAACTTTGGTGTTAGATGTACAAAGTATAGCTTTAGGAGGAAAACATGCTGCATTAGTCACAAAACAAGGGGAAGTGTTCTGCTGGGGTCAAGGGACCAGGGGAAGGCTAGGGCATAAAATTGGCATTGATGTGAACTCCCCCAGAATTGTTGATTCTTTTAACGGGGTTCATATAAAATATGCTGCCTGTGGGGAGTATCATTCATGTGCTTTGACTGATGCTGGTGAAGTATATACATGGGGGAACGATGGTGGTTGTACAGATTCTGGTAGTTACGGGAGATGGATACCACATAAACTTTCAGGACCTTTAGACGGTATTTGTATTTCAAGTGTTGCTTGTGGGGAATGGCATACAGCAGTTGTTTCTTGCTGTGGAAGACTATTTACGTATGGAGATGGTACTTTTGGAGTTCTGGGGCATGGGAATCTACAGAGCATTTCTCAACCAAAAGAAGTTGAGTCTCTTAGAAATCTACGAGTGAGGTCTGTCGCTTGTGGATCATGGCATACAGGAGCTATTGTAGAAGTCATAGCTGCCCGTTTTCGGTACAATACTCCTTGTGGTAAGCTGTTTACGTGGGGCGATGGAGATGAAGGGAAGCTTGGTCACCCTGATAATGGGAGGAAGCTTTTACCGACATGTGTTTCACAACTTGTGGATTATGATTTTGTTCAAGTATCTTGTGGGAGAATGTTGACTGTAGCACTTACTAATATGGGTAAAGTTTTTACAATGGGAAGCCTGGTGCATGGACAGCTAGGAAACTCACATGCCAAGGATAAGATGGTGAGTATTGTTGAAGGACAGCTGAAACAGGAGTTTGTTAAGGAAATATCATCTGGTTCCTATCATGTGGCTGTGTTGACATCTTCCGGGAGTGTATACACGTGGGGCAAGGGTACAAATGGGCAGCTAGGATTGGGTGACACTGAAGACAGACACTCACCTTCTTGTGTTGAAGCTCTAAAAGACAGGCAGGTAGAGAGTATTGCTTGTGGATCATGCTTCACCGCTGCAATCTGTTTACACAAACCGGTTTCTGTTATTGACCAGTCAGCTTGTAGTGGTTGTAAGCTGCCATTTGGTTTCAGAAGGAAGAAGCACAACTGTTATAACTGTGGTCTTCTATTCTGCCATCCATGTAGTACTAACAAGGTAACAAATGCATCTCTAGCACCAAATAGGAGCAAGGCTTTTCGGGTCTGTGATCAGTGCTTTAACAAATGCCAAGGCATTACACACTCACCTGCTGTATCCAAGTCGAGAAATTACAACACTCAGCAGCAACTGAAGCATCAGAATAAGTTTCCTGATCTGACAGAAGATAGAGGCGAAACAACAGTGACACCAGGTCCTTTGTTGTCTCTTGGTCAATCATGTTACATGAAAAGCATGCCTAGCGGACGGAAGGACTGGAGAAATCAACAAGAAAGCCAGAAGCATTTAGAGTATACTTCTTCAGTGTTGGGTGGGGTGCCACAATGGGGGCAAGTTGCATGCCCTGATCTATTTAAATTAGATTGTACAGAAAATTCTTTTGGGCGTGTTTCTTCATCCAAAAAAAATTTAGCTTCTGCTAATCTGCTGAATTCAGAATCCACACTATCCAGCATCCCTAATGCAGAGAAAGATGTACTGAAGTCTGATAAATTGCTCATGGAAGTTCGGAGGCTGAGAGCTGAGGCTAGGAGGCTCGAAGAGCAATGTGAGCTCAGAAACCATATATTACAAGAATGCCATAAAAAAATTGAGGAGACTATGTCGTTGGCAAAGGAGGAAGCTGCTAAGTGTAAGGCAGCGAAAGAGGTCATAAAAGCTTTGGCATCAAAACTTCATACAACATCAGGAAAAGCTGACGCCGGACAAGAAGAAAATGTCGGGATACGCGAATGTCTGCCTTATCTTTCATCTATTCATACTGATATTCGTACTCCAAAGGATTGCAACGTGGACAGTCTATCTAGTTCCCCTATAGTATTCTCTGACACATTAAAATCCAAATTTGGGAGAAGTATGTTCCTCCAAAGTGATAAACCAAAGAAGGATTCTCACTTCACTGTAGTAGAATCTCAACAAGACAGCACCACAGAATCAAAGGTTGAATGGGTAGAACAGTATGATCCTGGTGTGTACATCACACTCACGACCTTGCCGTGTGGGCAAAAGGGCCTTAAGCGAGTGAGATTCAGCCGGAAAAGATTCTCAGAGAAGGAAGCAGAGAAGTGGTGGGAAGAGAATCAAAGCAGAGTGTACCGTAAGTATGAGATTGAAGGATATTCAAATACAAGCCGAAGCCAGTCTGAGGATGCATATGCTCTTTGTCGGGTGTTCAAGAAGACTGGGGTGATTACTACCAAAATAGGAGAGCAGTACGCGAATAGCAGCCATGCAAATCATCATCAGATAATGGCGAGTGATCAGTCATCTAGCATCGAACTTTACTCTGAAGGAAGAACTGAAGATTTGGAGATATCTAATTATCTCAATATGCCTCTCCATCATAATAATGCTGCACAAAGAGATCAAGCCAATTTCTCACACTTCTTGTCACAGGACCCTTTCTCTCTTCCCAATTCTTCTTCATCATTTCATCCCAACTATGCCGCCATACCATACCCTCCATCCAAGGTGGATATAGCAGTAGAGTGTGCAAGGATGCAGCATAGGTTCACAATGCCCCCATTGGAGGTGGAGGACTTTCCTCAAGTGGGTGTCTCTGAACGGAAGATGCAGCCACAAGCCTGTGGTGTGAGCAGAAATAATGAAGCCGACATGTTATTACAGGAGATTCTCTCAGTCGCTCATGCTTCTCAGGAACTCTCAAACCCCTCCAACTATTCTCATCACTCGTGGGGCACTACCTCTACTACTACTGCAACTGCAAATGAACAACAAGAAGATGACTTCTCCTTCATGGTTGGCAGAGATAGTAATAATTATTACACCCATCCCTCCTGGGAAGATCCCATTAACACAAGGTCCATAGAGATTGGGGATCTTGATCATGACTTCAGAGCAGAGAGGATGGCTGAGAATTTAAGATGGGTTGGAATGTCAAGCAAGGACTTAGAAATTAAGAGCTTCATGGAAGAGCAGAAGATTGTTCCAATTGAGGATATTTCCAAGTTCCCAAGTATCAGGGAAGGGAATGAGATGTTGCAAGAATGTGATAATCAGAACCAAAATAGCAGCAGGGAATTCAATGACAGTGAAATAAACGACTTCTCGTTGGGGTTTATCAACGAGGATGACCCTACTGAGAATTTGATAGATGATGAAGAGGGTGATTATTCGAGTTCTCCAAGCTTTGAGGTGGTTGAAGAAGTCAAAGTCAGCCATGGAATGTTCGTGTCCACAAGACAAGTGGCTGACACATTCTTTCACCAAATAGTCCCTTCACAGACCCTCAAGGTTCATCTCAACCCGGAAACAGAGGCACATAATCACTCCATACACAACACAGAGACATGTACAGTGTCTAATAATTTCTTCCGAAACTTAAAGGACTGTGTGATGGGGAAGCTGATAATGAAGCCGTCAATGACAATAGCGAGTGTCATAATGTTCATGTTTGCAATTCTTCTCATGCATTGGGTTTGTTCAGATTCAGAGGATACAGTGCAGCAGAGAAGTTGGATGACGAGAATGATCAGAGAGTGTGGAGCTGAGAAGATGATGAAATGGAATAATGACGAGAAGGAAAAGGTTTGGTTTGTGGGGATCAGAAGTGGGAAAGGATTCACTGAGGTTTTGAAGAAGATAGGCATTTTTCTCACCATTTCTTTTGCTCTTTGTACCATGTGGGCTAACCACATCATTCTTCATTAA 4728 0.43 MTIGEESLASVPFDRAVEQAILSIKKGAYLLKCGRRGKPKLCPFRLSPDEKILIWYSGHQEKHLQLSAVTKIVQEQGNIRSHRQSQPEECHSFSLIYANGERSLNLICKDKAQAASWLAGLRAVISRSQHSRSLSSLRSCKGLQSCVSSPAGIFRRKKKLGLVVEDTAEYTQVHSLCASPVLSLSERCYSEGLSYASDNSFCSSEPFLHNTQRITDISVPSSPCIDPDFLNKSRSAYSDTQHRKNLPYRCLPPSTSPHVGNKNVLKDVMIWGGGIVGSGNNRLANQQNVHTVLPKLLESTLVLDVQSIALGGKHAALVTKQGEVFCWGQGTRGRLGHKIGIDVNSPRIVDSFNGVHIKYAACGEYHSCALTDAGEVYTWGNDGGCTDSGSYGRWIPHKLSGPLDGICISSVACGEWHTAVVSCCGRLFTYGDGTFGVLGHGNLQSISQPKEVESLRNLRVRSVACGSWHTGAIVEVIAARFRYNTPCGKLFTWGDGDEGKLGHPDNGRKLLPTCVSQLVDYDFVQVSCGRMLTVALTNMGKVFTMGSLVHGQLGNSHAKDKMVSIVEGQLKQEFVKEISSGSYHVAVLTSSGSVYTWGKGTNGQLGLGDTEDRHSPSCVEALKDRQVESIACGSCFTAAICLHKPVSVIDQSACSGCKLPFGFRRKKHNCYNCGLLFCHPCSTNKVTNASLAPNRSKAFRVCDQCFNKCQGITHSPAVSKSRNYNTQQQLKHQNKFPDLTEDRGETTVTPGPLLSLGQSCYMKSMPSGRKDWRNQQESQKHLEYTSSVLGGVPQWGQVACPDLFKLDCTENSFGRVSSSKKNLASANLLNSESTLSSIPNAEKDVLKSDKLLMEVRRLRAEARRLEEQCELRNHILQECHKKIEETMSLAKEEAAKCKAAKEVIKALASKLHTTSGKADAGQEENVGIRECLPYLSSIHTDIRTPKDCNVDSLSSSPIVFSDTLKSKFGRSMFLQSDKPKKDSHFTVVESQQDSTTESKVEWVEQYDPGVYITLTTLPCGQKGLKRVRFSRKRFSEKEAEKWWEENQSRVYRKYEIEGYSNTSRSQSEDAYALCRVFKKTGVITTKIGEQYANSSHANHHQIMASDQSSSIELYSEGRTEDLEISNYLNMPLHHNNAAQRDQANFSHFLSQDPFSLPNSSSSFHPNYAAIPYPPSKVDIAVECARMQHRFTMPPLEVEDFPQVGVSERKMQPQACGVSRNNEADMLLQEILSVAHASQELSNPSNYSHHSWGTTSTTTATANEQQEDDFSFMVGRDSNNYYTHPSWEDPINTRSIEIGDLDHDFRAERMAENLRWVGMSSKDLEIKSFMEEQKIVPIEDISKFPSIREGNEMLQECDNQNQNSSREFNDSEINDFSLGFINEDDPTENLIDDEEGDYSSSPSFEVVEEVKVSHGMFVSTRQVADTFFHQIVPSQTLKVHLNPETEAHNHSIHNTETCTVSNNFFRNLKDCVMGKLIMKPSMTIASVIMFMFAILLMHWVCSDSEDTVQQRSWMTRMIRECGAEKMMKWNNDEKEKVWFVGIRSGKGFTEVLKKIGIFLTISFALCTMWANHIILH 1575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa09g0506 1575 SUPERFAMILY RCC1/BLIP-II 266 644 IPR009091 -
Bisa09g0506 1575 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 592 643 IPR000408 -
Bisa09g0506 1575 Gene3D - 484 654 IPR009091 -
Bisa09g0506 1575 Gene3D - 229 483 IPR009091 -
Bisa09g0506 1575 Gene3D - 16 133 IPR011993 -
Bisa09g0506 1575 Pfam Regulator of chromosome condensation (RCC1) repeat 488 536 IPR000408 -
Bisa09g0506 1575 Pfam Regulator of chromosome condensation (RCC1) repeat 322 370 IPR000408 -
Bisa09g0506 1575 Pfam Regulator of chromosome condensation (RCC1) repeat 425 473 IPR000408 -
Bisa09g0506 1575 Pfam Regulator of chromosome condensation (RCC1) repeat 591 640 IPR000408 -
Bisa09g0506 1575 Pfam FYVE zinc finger 651 710 IPR000306 GO:0046872
Bisa09g0506 1575 SUPERFAMILY PH domain-like 16 125 - -
Bisa09g0506 1575 SMART fyve_4 642 711 IPR000306 GO:0046872
Bisa09g0506 1575 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 374 424 IPR000408 -
Bisa09g0506 1575 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 322 373 IPR000408 -
Bisa09g0506 1575 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 62 905 - -
Bisa09g0506 1575 Pfam Transcription factor regulating root and shoot growth via Pin3 1000 1054 IPR013591 -
Bisa09g0506 1575 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 425 476 IPR000408 -
Bisa09g0506 1575 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 411 421 IPR000408 -
Bisa09g0506 1575 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 540 591 IPR000408 -
Bisa09g0506 1575 Pfam Pleckstrin homology domain 18 123 IPR001849 -
Bisa09g0506 1575 SUPERFAMILY FYVE/PHD zinc finger 651 722 IPR011011 -
Bisa09g0506 1575 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 488 539 IPR000408 -
Bisa09g0506 1575 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 655 710 IPR013083 -
Bisa09g0506 1575 PRINTS Chromosome condensation regulator RCC1 signature 305 318 IPR000408 -
Bisa09g0506 1575 PRINTS Chromosome condensation regulator RCC1 signature 587 608 IPR000408 -
Bisa09g0506 1575 PRINTS Chromosome condensation regulator RCC1 signature 324 340 IPR000408 -
Bisa09g0506 1575 PRINTS Chromosome condensation regulator RCC1 signature 529 547 IPR000408 -
Bisa09g0506 1575 PRINTS Chromosome condensation regulator RCC1 signature 411 427 IPR000408 -
Bisa09g0506 1575 PRINTS Chromosome condensation regulator RCC1 signature 427 441 IPR000408 -
Bisa09g0506 1575 ProSiteProfiles BRX domain profile. 1000 1055 IPR013591 -
Bisa09g0506 1575 Coils Coil 848 868 - -
Bisa09g0506 1575 ProSiteProfiles PH domain profile. 91 126 IPR001849 -
Bisa09g0506 1575 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 648 710 IPR017455 -
Bisa09g0506 1575 CDD PH_PLC_plant-like 15 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa09g0506 Bisa-ChrBisa09 7431236 7451864 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa09g0506 1050 1567 NAC Transcription Factor Family AT1G65910 33.575 1.35e-55 204