Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa09g0485 ATGACCACTGAAGGATGGTGGCACATGCCTGCTGTCACATCACTCCCCAATGTACGATCAGGATCGTCCAGTACGGATGATCCAACGGCTCAGATTGCTTCTTCCCATGACTCTTACAGAGACGCTCCTTCTCTCTCTCTCTACTGCACACAGGTCCAGCTTTGGTCGGTACCCCCTTATAAGAGGCAAAGAAAAGTAAAGCTTGATATGAAGCTTTCAACATCAGGGTTGGGTCAGCAGGGACCTGAAGGAGGAGGAGTAGGGGAGAAGAAGTGTCTGAATTCTGAGCTATGGCATGCATGCGCGGGTCCCCTTGTGTCCCTACCAACTGCAGGGACTCGTGTGGTTTACTTCCCTCAGGGACATAGCGAGCAGGTTGTAGCCACAACTAACAGAGAAGTTGATGGGCACATACCCAATTACCCGAGCTTGCCACCCCAGTTAATCTGCCAGCTTCATAACGTCACAATGCATGCTGATGTCGAAACAGATGAAGTATATGCTCAAATGACCCTACAGCCTTTGTCTCCGCAAGAGCAGAAGGATACATTTCTTCCTTTGGAATTGGGCATTCCGAGTAAGCAGCCCTCTAACTATTTTTGCAAGACATTAACAGCAAGTGACACCAGCACACATGGAGGGTTTTCTGTTCCTCGTCGTGCAGCTGAGAAAGTTTTCCCTCCATTGGATTTCTCACAGCAGCCACCAGCCCAAGAACTAATTGCTAGGGATCTCCATGATGTTGAATGGAAGTTTAGGCATATATTTCGAGGACAGCCAAAACGGCACCTTCTTACAACAGGCTGGAGTGTATTTGTTAGTGCTAAGAGACTTGTGGCTGGAGATTCTGTGCTTTTTATATGGAATGAAAAGAATCAGCTTCTTTTAGGAATACGTCGAGCCAATCGACCACAAACTGTGATGCCATCGTCGGTTCTTTCAACTGATAGTATGCACATTGGACTTCTTGCAGCTGCTGCTCATGCTGCTGCAACTAATAGCTGTTTTACTGTGTTTTATAATCCAAGGGCTAGTCCGTCTGAGTTTGTCATACCACTTTCGAAATATATCAAAGCTGTATATCATACGCGTGTTTCAGTTGGCATGCGTTTCAGGATGCTTTTCGAAACTGAGGAATCTAGCGTACGCAGGTACATGGGTACAATAACTGGCATAAGTGATCTGGATCCTGTTCGATGGCCAAACTCCCATTGGCGATCTGTCAAGGTTGGTTGGGATGAGTCAACAGCTGGAGACAGACAGCCACGGGTATCATTGTGGGAAATTGAGCCTTTGACTACATTCCCTATGTATCCATCACTGTTTCCTCTCAGATTGAAACGTCCATGGCATCCTGGTTCCTCATCTTTGCATGATGGAAGAGATGAAGCAGGGCTAATGTGGCTGAGAGGTGCACCTGGAGATCAAGGTCTCAACTCCCTAAATTTCCAAGGAGTCGGTTTGTTGCCCTGGATGCAGCAGAGACTAGATCCAACTTTGCTTGGGAGTGACCATAATCAACAGTATCAATCCATGTTGGCAGCTGGTTTGCAGAACGTAGGGAGTGGAGATCTCTTGCGCCAACAAATGATGCATTTGCAACAACCCTTCCATTATCTTCAACAATCAGGAAATCAAAATTCTCTGCAGCTTCAACAGCATCAAGCAATTCAACCATCATTGTGTTCTAATATCCTACAGCCACAAGCTCAAGTTTTGGCAGAGAACCTGTCTCAGCACCTTCTCCAGAAACCACATAACAATCAAGAAGAACAAGCACAGAAGCAGCAGCAGAATACTTATCATGATACATTTTTGATTCAGGGTGATCAGCTGCCACAGAGGCATCACTCTCATGTGCCTTCACCGTCATATTCGAAACCTGATTTCTCAGATTCAAGCATAAAGTTCTCCTCATCAGTTTCCCCAGGACAGAACATGCTTAATTCACTTGGCCCTGAAGGGAGTAGCAATCTTTTGAACTTATCCAGAACCAGTCAGTCCATGCTGACTGAACAGTTATCCCAACAATCATGGGCTTCAAAGTATGCACCTGTGCAGGTTAGTTCTGCCTTTGGCAACTCAATGTCTCACACACAATATAGTGGGAAAGATTCTGCAATGGTGCCCCAACATTGTAGTTCAGATACCCAAAATCCTACTCTCTTTGGTGTTAATATTGAATCATCTGGACTTTTGCTCCCCACCACTGTGCCTGGTTATACGACTTCATCAGTTGGTACCGATGCATCAACAATGCCACTAGGGGAGTCTGGATATCAGGGTTCTTTATATGCTTGCATGCAAGATTCATCAGAGTTGCTTCAAAGTTCAGGACAAGTTGACCCACAAAACCAGACTCAGACATTTGTCAAGGTTTACAAATCAGGGTCGGTTGGGCGTTCACTTGACCTCTCCCGGTTCAGCAGCTATCACGAGCTGAGAGAGGAGTTGGCCCAAATGTTTGGGATTGAGGGGAAGTTAGAAGACCCTCTTAGATCAGGCTGGCAGCTTGTATTTGTCGACAGGGAGAATGATGTTCTTCTCCTTGGAGACGATCCATGGGAATCATTTGTCAATAATGTTTGGTATATCAAGATACTTTCACCTGAAGATATTCAGAAAATGGGCGAGCAAGCGGTGGAATCGCTTGGTCCGAATGCGGGACAAAGGGTGAATAGCAGCACCGTGGAGTCTCAGAACATCGTTTCTGGGTTTCCATCAATGGGCTCGCTCGAATACTGA 2745 0.4608 MTTEGWWHMPAVTSLPNVRSGSSSTDDPTAQIASSHDSYRDAPSLSLYCTQVQLWSVPPYKRQRKVKLDMKLSTSGLGQQGPEGGGVGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQVVATTNREVDGHIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPQEQKDTFLPLELGIPSKQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSTDSMHIGLLAAAAHAAATNSCFTVFYNPRASPSEFVIPLSKYIKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGDRQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGSSSLHDGRDEAGLMWLRGAPGDQGLNSLNFQGVGLLPWMQQRLDPTLLGSDHNQQYQSMLAAGLQNVGSGDLLRQQMMHLQQPFHYLQQSGNQNSLQLQQHQAIQPSLCSNILQPQAQVLAENLSQHLLQKPHNNQEEQAQKQQQNTYHDTFLIQGDQLPQRHHSHVPSPSYSKPDFSDSSIKFSSSVSPGQNMLNSLGPEGSSNLLNLSRTSQSMLTEQLSQQSWASKYAPVQVSSAFGNSMSHTQYSGKDSAMVPQHCSSDTQNPTLFGVNIESSGLLLPTTVPGYTTSSVGTDASTMPLGESGYQGSLYACMQDSSELLQSSGQVDPQNQTQTFVKVYKSGSVGRSLDLSRFSSYHELREELAQMFGIEGKLEDPLRSGWQLVFVDRENDVLLLGDDPWESFVNNVWYIKILSPEDIQKMGEQAVESLGPNAGQRVNSSTVESQNIVSGFPSMGSLEY 914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa09g0485 914 Gene3D - 198 301 IPR015300 -
Bisa09g0485 914 Pfam AUX/IAA family 782 872 IPR033389 -
Bisa09g0485 914 SUPERFAMILY DNA-binding pseudobarrel domain 184 329 IPR015300 -
Bisa09g0485 914 MobiDBLite consensus disorder prediction 615 660 - -
Bisa09g0485 914 ProSiteProfiles PB1 domain profile. 788 872 IPR000270 GO:0005515
Bisa09g0485 914 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 89 877 IPR044835 GO:0003677|GO:0006355|GO:0009725
Bisa09g0485 914 MobiDBLite consensus disorder prediction 613 660 - -
Bisa09g0485 914 ProSiteProfiles B3 DNA-binding domain profile. 200 302 IPR003340 GO:0003677
Bisa09g0485 914 Pfam B3 DNA binding domain 200 301 IPR003340 GO:0003677
Bisa09g0485 914 FunFam Auxin response factor 198 302 - -
Bisa09g0485 914 Gene3D - 784 877 - -
Bisa09g0485 914 SMART B3_2 200 302 IPR003340 GO:0003677
Bisa09g0485 914 CDD B3_DNA 199 300 IPR003340 GO:0003677
Bisa09g0485 914 Gene3D - 364 436 - -
Bisa09g0485 914 SUPERFAMILY CAD & PB1 domains 780 862 - -
Bisa09g0485 914 MobiDBLite consensus disorder prediction 16 37 - -
Bisa09g0485 914 FunFam Auxin response factor 783 877 - -
Bisa09g0485 914 FunFam Auxin response factor 364 436 - -
Bisa09g0485 914 Pfam Auxin response factor 326 409 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa09g0485 Bisa-ChrBisa09 7080126 7088723 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa09g0485 170 885 B3 DNA Binding Superfamily AT5G37020 68.226 0.0 934
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Bisa09g0485 AUX_IAA 2.5e-08 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa09g0485 09 7080126 7088723 Bisa09g0485 09 7080126 7088723 ECH