Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa09g0473 ATGGAGACGGTTCTCAAGAAATACTTTGGGTTTTCTGAGTTTCGGCCTTACCAGAAGGATGTTATCGAGAAAATTATTGAGAAAAGGGACTGCTTGGTAGTCATGGCTACCGGCAGTGGGAAGTCCTTGTGCTATCAGGTACCTCCTTTGGTTGTTAGAAGGACTGGGATAGTTGTCAGCCCGCTAATTTCGTTAATGCAAGACCAGGTAATGGCTTTAAAACAACGGGGTATCAGAGCTGAGTACCTTGGAAGTGCTCAGATAGATCCCACTGTCCAGAATAGAGCTGAGAGAGGCCAATTTGACATTTTGTTCATGACTCCTGAGAAGGCATGTTTAATTCCCACCAGCTTCTGGTTGAATTTGCTAAAGGAAGGAATTAGTCTTTTTGCTGTTGATGAGGCACATTGCATATCAGAGTGGGGCCATGATTTTAGGGTGGAATACAAGCAGTTGGACAAGTTACGCGGTGTTCTATCAGATGTTCCTTTTGTTGGCCTAACTGCAACTGCTACTGAAAAGGTTCGAGTTGACATCATCAGTTCCTTGAAGATGAGTAATCCTTATATTTCGGTTGGTTCATTTGATCGCACAAATCTTTTCTATGGTGTCAAGCCTTTTAACCATGGACAAAATTTTCTGAATGAGCTTGTGCGAGATATTTCCAAAAACGTTGCTAGTGGTGGTTCAACTATAATCTACTGCACAACAATCAAAGATGTAGAGCAGATTTCCAAGTCACTTTTGGAAGCAGGTATTGCAGCTGGGATGTACCATGGGCAAATGAATAAGAAAGCTCGTGAGGAATCTCATAGATTATTTGTTAGAGATGAACTGCAAATCATGGTAGCCACTGTTGCTTTTGGTATGGGTATAGATAAGCCTGACATTAGATGGGTGATACACTATGGTTGCCCTAAGAGCCTAGAGTCCTACTACCAGGAAAGTGGGCGATGCGGTCGAGATGGTATAGCTTCTGTCTGTTGGCTTTATTACACAAGAAATGACTTTGCAAAGGGCAACTTCTATTGTGGAGAATTACAGACGGAAATGCAAAGAAGAGCTGTCATGGAGTCATTAATTGCTGCTGAACGCTATTGCTTGCTGACAACTTGCAGAAGAAAGTTCTTGCTTGAATACTTTGGGGAGAAAGTTTCAACTGATAGATGTGGAAATTGTGATAACTGCACTGTCTCAAAGAAGGAGCGTGACATGTCACAGGAAGCATTTCTTCTACTGGCTTGCATTCAATCATGCAATGGTAAATGGGGCCTCAATATGCCCATTGACATCCTGCGTGGGTCCCGAGCCAAGAAAATTCTTGATGCTCAGTTTGACAAGCTTCCACTTCATGGTCTTGGGAAAACTTACCCTTCAAATTGGTGGAAAGCACTTGGACATCAACTAATTTTTCATGGTTATTTGAAGGAGACTGTTCGTGATGTGTACAGAACTGTAAGTGTCAGTTCAAAAGGAGAGCAATTTTTGGCCTCTTCCACACCGGATTATCAACCACCCTTAGTTTTGTCGGTGACTACTGAAATGGTTGATGAAGAGGAAAATAGATGTGCACAAGAAGAATTAAAAAATTTAGCCACTTCAGAGACTGAGGGTTTTTCAGAGGCTGAGGGACAACTCTACCGAATGCTTTTGGAAGAGAGATTGAAACTTGCAAGAAGCATTGGAACAGCTCCATATGCCATATGTGGTGATCAAACAATCAAGAAAATTGCACTGACAAGACCATCTACAAAAGCAAGGCTAGCAAACATTGATGGTGTGAATCAGCACCTTGTCACAAAATATGGAGATCATTTTCTTCAAGTCATTCAACGATTGTCACAAGGATTGAACCTTTCATTGGATGGTGAAGCAAACTTGCCAACTCCTGCAGTAAGGAATTTGTCCCCTGTAAGTCTAACCAATGCGTCAAAGAAGTTGACACCAGCAAAGTTTGAGGCCTGGAAAATGTGGCACGAAGATGGTCTTTCTATTCCGATGATTGCCAACTTTCCAGGTAGATCAGCTCCTATAAAAGAGCAGACTGTTGCTGATTATCTCCTGGAAGCTGCCCAAGAAGGATTGCCTTTTAATTGGACTAGATTCTGCGAGATTGTTGGACTGACACCTGAGATCATCTCTGAAATTCAGGGTGCTATTCTAAGGGTTGGATCTAAAGAAAAACTGAAGCCTATAAAACTTGAATTACCAGAAGACGTAAGTTATATGCACATCAAGACCTATTTGGCCATGGAAAACTCTGGAATATCTCCAGAAGGCATATGGCCTGGAAGTGGCCAGGCAGGGAACAGTGACGAACTCATAAAGATTACATCAGATTCATCACAGGATCCATTTGATACATGCCACATGGAAATGCATAGTGAAGTTGACATGTCTGCCAAGAGTTCGGTGAAAAAATGTGACCTAGAAAAGGATGAGGAAACATCTGGACCTGCCGATAGTTTCCAGGTAGAAAATCTTGCATTATTATCTGAGGAACTCAAAAAGAAACGTCAAAAAGTGAGTGAACCAGAGGAAGAAAATTCCGTCAAATTGAAGGCGTCAGAGAGTTCCATAGTGGAGTGGCTGAAGGACCATGAAGAGGCTACGGAGACTGATATTCTAAAGCACTTCAACGGGTCCAGTGAAGATTCTGTGGTTGAACTACTGAATTACCTTGAAAGTGAGTTTTTGATATACAAGAAAAATAGCATCTACAGGCTTATGTAA 2733 0.419 METVLKKYFGFSEFRPYQKDVIEKIIEKRDCLVVMATGSGKSLCYQVPPLVVRRTGIVVSPLISLMQDQVMALKQRGIRAEYLGSAQIDPTVQNRAERGQFDILFMTPEKACLIPTSFWLNLLKEGISLFAVDEAHCISEWGHDFRVEYKQLDKLRGVLSDVPFVGLTATATEKVRVDIISSLKMSNPYISVGSFDRTNLFYGVKPFNHGQNFLNELVRDISKNVASGGSTIIYCTTIKDVEQISKSLLEAGIAAGMYHGQMNKKAREESHRLFVRDELQIMVATVAFGMGIDKPDIRWVIHYGCPKSLESYYQESGRCGRDGIASVCWLYYTRNDFAKGNFYCGELQTEMQRRAVMESLIAAERYCLLTTCRRKFLLEYFGEKVSTDRCGNCDNCTVSKKERDMSQEAFLLLACIQSCNGKWGLNMPIDILRGSRAKKILDAQFDKLPLHGLGKTYPSNWWKALGHQLIFHGYLKETVRDVYRTVSVSSKGEQFLASSTPDYQPPLVLSVTTEMVDEEENRCAQEELKNLATSETEGFSEAEGQLYRMLLEERLKLARSIGTAPYAICGDQTIKKIALTRPSTKARLANIDGVNQHLVTKYGDHFLQVIQRLSQGLNLSLDGEANLPTPAVRNLSPVSLTNASKKLTPAKFEAWKMWHEDGLSIPMIANFPGRSAPIKEQTVADYLLEAAQEGLPFNWTRFCEIVGLTPEIISEIQGAILRVGSKEKLKPIKLELPEDVSYMHIKTYLAMENSGISPEGIWPGSGQAGNSDELIKITSDSSQDPFDTCHMEMHSEVDMSAKSSVKKCDLEKDEETSGPADSFQVENLALLSEELKKKRQKVSEPEEENSVKLKASESSIVEWLKDHEEATETDILKHFNGSSEDSVVELLNYLESEFLIYKKNSIYRLM 910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa09g0473 910 FunFam ATP-dependent DNA helicase 197 398 - -
Bisa09g0473 910 FunFam ATP-dependent DNA helicase 1 195 - -
Bisa09g0473 910 Pfam DEAD/DEAH box helicase 16 175 IPR011545 GO:0003676|GO:0005524
Bisa09g0473 910 FunFam ATP-dependent DNA helicase 536 626 - -
Bisa09g0473 910 SMART hrdc7 540 620 IPR002121 GO:0003676
Bisa09g0473 910 NCBIfam RecQ family ATP-dependent DNA helicase 4 455 IPR004589 GO:0004386|GO:0006310
Bisa09g0473 910 Gene3D - 197 398 IPR027417 -
Bisa09g0473 910 SMART ultradead3 10 205 IPR014001 -
Bisa09g0473 910 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 22 189 IPR014001 -
Bisa09g0473 910 PANTHER DNA HELICASE RECQ FAMILY MEMBER 3 681 - -
Bisa09g0473 910 SUPERFAMILY "Winged helix" DNA-binding domain 395 501 IPR036390 -
Bisa09g0473 910 SMART RQC_2 404 508 IPR018982 GO:0006260|GO:0006281|GO:0043138
Bisa09g0473 910 ProSiteProfiles HRDC domain profile. 540 620 IPR002121 GO:0003676
Bisa09g0473 910 Gene3D - 399 524 IPR036388 -
Bisa09g0473 910 Pfam Helix-turn-helix domain 653 749 IPR029491 -
Bisa09g0473 910 SUPERFAMILY HRDC-like 539 615 IPR010997 GO:0000166|GO:0044237
Bisa09g0473 910 SMART helicmild6 242 323 IPR001650 -
Bisa09g0473 910 Pfam Helicase conserved C-terminal domain 218 322 IPR001650 -
Bisa09g0473 910 CDD SF2_C_RecQ 197 332 - -
Bisa09g0473 910 Pfam RecQ zinc-binding 348 397 IPR032284 -
Bisa09g0473 910 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 55 337 IPR027417 -
Bisa09g0473 910 Gene3D HRDC domain 539 619 IPR044876 -
Bisa09g0473 910 FunFam ATP-dependent DNA helicase 399 523 - -
Bisa09g0473 910 Pfam RQC domain 401 498 IPR018982 GO:0006260|GO:0006281|GO:0043138
Bisa09g0473 910 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 213 368 IPR001650 -
Bisa09g0473 910 Pfam HRDC domain 545 610 IPR002121 GO:0003676
Bisa09g0473 910 CDD DEXHc_RecQ 2 196 - -
Bisa09g0473 910 Gene3D - 1 195 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa09g0473 Bisa-ChrBisa09 6920515 6931568 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa09g0473 9 337 Eukaryotic Initiation Factors Gene Family AT3G19760 20.700 5.22e-08 54.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa09g0473 09 6920515 6931568 Bisa09g0473 09 6920515 6931568 ECH