Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa09g0448 ATGATCTTGAGTGTTGATGTTCTCCCGATTATTCGTAATAAGGGCAATTTAATTGGCCTCCACTTCAGCATTATCAAATCCAGATATGGCCCATATAGTGGGAAGAAGAGGGGAACAAAAAAAAAAGAGAAAAGGCCAAAAAAGGACACTAGGCTATCTATCACCATCATCCCGAGGCTCATTCAAGCTAGCAAAGCACGAACCTCTCGTTTATGCTTCTCAGTAGAGTCAGTACCCTATCTGGCTGTGCACTCTGGTAAGAAAGAAAAATCTCTTGCGAAGGAAGACGGGAAAACGATGTCGTACGTGCCTCCGCCCCTCAGGAGTTCGAGCTCCACTACTGTTGCTGCCAGAATTTCGTCTCTAACCCTAGACAACAACGATCACAGCAAGCTTGCTTTTTCATCTAATTCTCACTTTAACAGCTGTCCTACTCCTTCTTCACCCTCCACCTTCTCCAATTCCTCTCGCCGGAGCTTCGGAGCTCCTCCGCCGTCTCGGACTCTCGCTGTTCCCGACGCTGTCTTCCCTGACTGGCAACCATCTGAACGCGTTTCTCGTATGAAGCCCGAGCAGATTGAAGAGGTCCGAGTACGGCTTAATCTTGATGTTACTGTTGCTTCTGAATCTCTGCTTGCACCTGCACCAATAGAATCCTTTGCAGATATGTGTTTGAACCCGAGTATCATGAAGGATATTGCTTATCATGAATACACAAGGCCAACTTCTATCCAGGCACAGGCCATGCCAATTGCTCTTAGCGGAAGGGATCTATTGGGTTGTGCTGAAACTGGTAGTGGCAAAACTGCAGCTTTCACCATACCTATGATAGAGCATTGCTTGGCTCAACCTCCAATTCAACGTGGTAGTGGTCCTTTGGCATTGGTTTTGGCTCCTACTAGAGAGCTTGCTCAACAAATAGAGAAAGAGGTTAAAGCCTTCAGCAGATCACTTGAGTCATTAAAAACTGCAATAGTTGTGGGTGGAACTAACATTGAAAAGCAGAGGTCTGAGCTACGAGCAGGAGTTGACATAGTGGTTGCTACCCCTGGAAGATTTATTGATCACTTGCAACAAGGCAATACTTCCCTTTCTAGAATTTCTTTTGTTGTTCTAGATGAGGCTGATAGAATGCTTGATATGGGTTTTGAACCACAGATAAGAGAGGTGATGAGAAATCTTCCAGAGAAGCATCAAACCTTGCTATTTAGTGCAACTATGCCTGTGGAGATTGAAGCATTAGCAAAGGAGTACTTAGTTAGCCCAGTGGAAGTGAAAGTGGGGAAAGTGAGTAGCCCAACAGCAAACGTTTGTCAAACTCTTGTGAAGGTTTCTGAAAATGAGAAGATTGACCGGCTCCTAGATTTGCTTGTTGAGGAGGCATCACAAGCTGAAAAATGTGGTCGTCCATTTCCATTAACAATTGTGTTTGTGGAAAGAAAGACAAGGTGCGATGAAATTGCTGAAGCATTGGTAGCTCAAGGGCTATCTGCTGCTTCTCTCCACGGTGGCCGTAGTCAAAGTGAAAGAGAGGCTGCTTTGCATTATTTTCGGAGTGGCTCGACCAACATATTGGTTGCCACTGATGTTGCATCTCGTGGCTTGGATGTCACAGGAGTGTCACATGTTATCAATTTAGATCTTCCAAAGACCATGGAAGATTATGTACACCGGATTGGGAGGACAGGGCGTGCAGGATCAACAGGCCAGGCAACTTCTTTTTACACTGACCGTGATATGTTCCTTGTGGCAAATATAAGGAAAGCTATAGCTGATGCTGAATCTGGGAATGCTGTGGCATTTCCAACTGGAAAGGTTGCTAGAAGGAAGGAGAAAGAGGCAGCAGCTGCGCAGAAAGAGGCCAAGATTGCTTTGTCCAAGAACTTATAA 1890 0.4534 MILSVDVLPIIRNKGNLIGLHFSIIKSRYGPYSGKKRGTKKKEKRPKKDTRLSITIIPRLIQASKARTSRLCFSVESVPYLAVHSGKKEKSLAKEDGKTMSYVPPPLRSSSSTTVAARISSLTLDNNDHSKLAFSSNSHFNSCPTPSSPSTFSNSSRRSFGAPPPSRTLAVPDAVFPDWQPSERVSRMKPEQIEEVRVRLNLDVTVASESLLAPAPIESFADMCLNPSIMKDIAYHEYTRPTSIQAQAMPIALSGRDLLGCAETGSGKTAAFTIPMIEHCLAQPPIQRGSGPLALVLAPTRELAQQIEKEVKAFSRSLESLKTAIVVGGTNIEKQRSELRAGVDIVVATPGRFIDHLQQGNTSLSRISFVVLDEADRMLDMGFEPQIREVMRNLPEKHQTLLFSATMPVEIEALAKEYLVSPVEVKVGKVSSPTANVCQTLVKVSENEKIDRLLDLLVEEASQAEKCGRPFPLTIVFVERKTRCDEIAEALVAQGLSAASLHGGRSQSEREAALHYFRSGSTNILVATDVASRGLDVTGVSHVINLDLPKTMEDYVHRIGRTGRAGSTGQATSFYTDRDMFLVANIRKAIADAESGNAVAFPTGKVARRKEKEAAAAQKEAKIALSKNL 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa09g0448 629 Gene3D - 178 429 IPR027417 -
Bisa09g0448 629 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 249 425 IPR014001 -
Bisa09g0448 629 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 371 379 IPR000629 -
Bisa09g0448 629 FunFam probable ATP-dependent RNA helicase DDX17 178 428 - -
Bisa09g0448 629 SMART helicmild6 485 566 IPR001650 -
Bisa09g0448 629 Gene3D - 431 624 IPR027417 -
Bisa09g0448 629 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 449 607 IPR001650 -
Bisa09g0448 629 SMART ultradead3 237 442 IPR014001 -
Bisa09g0448 629 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 291 586 IPR027417 -
Bisa09g0448 629 CDD SF2_C_DEAD 439 575 - -
Bisa09g0448 629 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 218 246 IPR014014 GO:0003724
Bisa09g0448 629 MobiDBLite consensus disorder prediction 138 162 - -
Bisa09g0448 629 Pfam Helicase conserved C-terminal domain 449 566 IPR001650 -
Bisa09g0448 629 MobiDBLite consensus disorder prediction 138 167 - -
Bisa09g0448 629 CDD DEADc 229 426 - -
Bisa09g0448 629 Coils Coil 304 324 - -
Bisa09g0448 629 Pfam DEAD/DEAH box helicase 242 412 IPR011545 GO:0003676|GO:0005524
Bisa09g0448 629 MobiDBLite consensus disorder prediction 88 109 - -
Bisa09g0448 629 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 202 618 - -
Bisa09g0448 629 Coils Coil 607 627 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa09g0448 Bisa-ChrBisa09 6481142 6495943 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa09g0448 218 588 Eukaryotic Initiation Factors Gene Family AT1G72730 35.733 5.82e-68 226
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa09g0448 09 6481142 6495943 Bisa09g0448 09 6481142 6495943 ECH