LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa09g0422	ATGCCAGAGATCGAACGTGTCCAGGACAACAACAACGCGTTGTTCGGAAAATATGAGCTCGGAAGGCTTTTGGGCTGTGGGGCCTTCGCCAAGGTCTATTTCGCACGAAATGTTCAGACCGGCCAGAGCATCGCCATTAAGGTCATCAACAAGAAGAAGATCTCCAGCTCCGGTCTCATGCCCAACGTCAAGCGCGAGATTACCATCATGAGTCGCCTCCGCCACCCCCACGTCGTGAGGCTCTATGAGGTCTTAGCCACCAAATCCAAGATCTACCTCCCCATGGAGTTGGTCAAGGGCGGCGAATTGTTTACCAAGATCTCCAAGGGACGTTTCAGCGAGGATGTCAGCCGCAAGTATTTTCATCAATTGATCTCCGCCGTCGCGTACTGCCACTCCCGCGGTATTTACCATCGTGACTTGAAACCGGAGAATCTCTTGGTCGACGATAACGGGAATCTGAAGGTTTCGGACTTCGGACTCAGTGCCGTGAGGGAACAGATCCGATCCGACGGGATGCTTCATACGCTTTGCGGCACACCGGCTTACGTCGCACCGGAGGTCCTGACGAAGCGTGGTTACGATGGGGCGAAGGTTGATGTGTGGTCCTGTGGCATCATCCTCTTTGTAATGACCGCCGGGTACCTACCGTTCAACGACCCGAACCTCATGGTTATGTACAAGAAGATCTACAAAGGCGATTACCGGTGTCCTAAGTGGATGTCGTCGGATCTCCGACGGTTCCTATCGAGGCTTCTGGACACCAACCCGGAGACCCGAATCACCATCGACGGGATCCTTCGGGATCCGTGGTTCAGGAAAGGCTACAAGCCGGTCAAACTTCACGAGGAGCCCTTCGCTTCCGCGTCAGGGACAAGGCCCGATGAAGCGGATAAGATGACCGATTTGAATGCGTTTGATATCATCTCGTTCTCCCCCGGTTTGGACCTTTCCGGTTTGTTCGATGACAAGGACAACGCAGCCGAGGACGGCGAGCTGTTCGTGTCGTCGGAGTCACCGGAGAAGATAATGGAGATAGTGGAGGAGGTCGCCAGGTCGGAGAGACTCGTCTTGCGGAGGACGAAGGAATGTGGGGTAGTGCTGGAGGGGCAGAATGGTACTTTCGGGCTTGCAGTAGAGGTTTACCGGTTAACGGAAGGCCTGGTAGTGATAGAATCCAAGGGCAGAGGCAGAAGCGCTGTGAGTTTGTGGAAGAACAAGCTGAGGCCTCAGCTCTGCGCCACCGGCCAGGAGTCAAGTTCCCAGGTTGCCGGTGACTAG	1281	0.5496	MPEIERVQDNNNALFGKYELGRLLGCGAFAKVYFARNVQTGQSIAIKVINKKKISSSGLMPNVKREITIMSRLRHPHVVRLYEVLATKSKIYLPMELVKGGELFTKISKGRFSEDVSRKYFHQLISAVAYCHSRGIYHRDLKPENLLVDDNGNLKVSDFGLSAVREQIRSDGMLHTLCGTPAYVAPEVLTKRGYDGAKVDVWSCGIILFVMTAGYLPFNDPNLMVMYKKIYKGDYRCPKWMSSDLRRFLSRLLDTNPETRITIDGILRDPWFRKGYKPVKLHEEPFASASGTRPDEADKMTDLNAFDIISFSPGLDLSGLFDDKDNAAEDGELFVSSESPEKIMEIVEEVARSERLVLRRTKECGVVLEGQNGTFGLAVEVYRLTEGLVVIESKGRGRSAVSLWKNKLRPQLCATGQESSSQVAGD	426

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa09g0422	426	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	136	148	IPR008271	GO:0004672\|GO:0006468
	Bisa09g0422	426	SMART	serkin_6	18	272	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa09g0422	426	FunFam	Non-specific serine/threonine protein kinase	9	97	-	-
	Bisa09g0422	426	Pfam	NAF domain	302	357	IPR004041	GO:0007165
	Bisa09g0422	426	FunFam	Non-specific serine/threonine protein kinase	8	304	-	-
	Bisa09g0422	426	Gene3D	Kinase associated domain 1, KA1	304	415	-	-
	Bisa09g0422	426	Pfam	Protein kinase domain	18	272	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa09g0422	426	ProSiteProfiles	NAF domain profile.	298	322	IPR018451	GO:0007165
	Bisa09g0422	426	ProSitePatterns	Protein kinases ATP-binding region signature.	24	47	IPR017441	GO:0005524
	Bisa09g0422	426	SUPERFAMILY	Protein kinase-like (PK-like)	15	290	IPR011009	-
	Bisa09g0422	426	ProSiteProfiles	Protein kinase domain profile.	18	272	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa09g0422	426	PANTHER	CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED	10	388	-	-
	Bisa09g0422	426	CDD	CIPK_C	304	413	-	-
	Bisa09g0422	426	Gene3D	Transferase(Phosphotransferase) domain 1	8	303	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa09g0422	Bisa-ChrBisa09	6068736	6070016	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa09g0422	1	425	CBL-interacting serine-threonine protein kinases	AT2G30360	61.927	0.0	544

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CAMKL-CHK1	Bisa09g0422		Pkinase	8.6e-73	CL0016