Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa09g0366 ATGACTACACTCAGCAATCTACATCCCAGCTGTCGATTCCCACTGGATCTAACGGCCCATGCGCCATTCAAATTATGTATATTTTGTGGTCCATTACAGGCTAGAGGGAAGAAGAAGCACTTGAAGAGGCTTAATGCTCCCAAGCACTGGATGCTCGACAAGCTTGGAGGTGCTTTTGCTCCCAAGCCTTCTCCTGGACCTCACAAGTTAAGGGAGTGTCTTCCACTCATCCTTATCCTGCGGAACAAACTCAAATATGCCCTCGCATACCGTGAGGTCAGTTCAATTCTCATGCAGCGACATGTTTTGGTTGACGGAAAAGTTAGAACTGATCAGAAGTACCCTGCAGGCTTTATGGATGTTGTGTCCATCCCAAAAACAAACGAGAATTTCAGGCTCCTTTATGATGCCAAGGGTCGTTTTCGCCTGCGATCAATAACAGAGGATGAGGCAAAGGAACAGAGGACGAGTTGGAACCATAAAGAGAAGGGAAAAGCATATGGGACCTTCGACACCATTCATGTCCAAGATGCTGCTGGAAACGAGTTTGCCACTCGTCTGGAGAATGTTTTCATTATTGGGAAGGGCCAAAAACCATGGGTCTCTCTACCCAAAGGAAAGGGTATTAAGTTGAGCATCATTGAAGAAGCAAGGCTGAGACGTGAAGCACAGAGGGCTTCAGCAGCATAA 690 0.4681 MTTLSNLHPSCRFPLDLTAHAPFKLCIFCGPLQARGKKKHLKRLNAPKHWMLDKLGGAFAPKPSPGPHKLRECLPLILILRNKLKYALAYREVSSILMQRHVLVDGKVRTDQKYPAGFMDVVSIPKTNENFRLLYDAKGRFRLRSITEDEAKEQRTSWNHKEKGKAYGTFDTIHVQDAAGNEFATRLENVFIIGKGQKPWVSLPKGKGIKLSIIEEARLRREAQRASAA 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa09g0366 229 Pfam S4 domain 83 122 IPR002942 GO:0003723
Bisa09g0366 229 Gene3D - 158 210 IPR014722 -
Bisa09g0366 229 FunFam 40S ribosomal protein S4 33 149 - -
Bisa09g0366 229 SMART s4_6 74 138 IPR002942 GO:0003723
Bisa09g0366 229 Gene3D - 33 149 IPR036986 GO:0003723
Bisa09g0366 229 PANTHER 30S/40S RIBOSOMAL PROTEIN S4 163 218 IPR000876 GO:0003735|GO:0005840|GO:0006412
Bisa09g0366 229 Pfam 40S ribosomal protein S4 C-terminus 177 223 IPR032277 -
Bisa09g0366 229 Pfam Ribosomal family S4e 127 152 IPR013845 -
Bisa09g0366 229 Pfam RS4NT (NUC023) domain 35 71 IPR013843 -
Bisa09g0366 229 CDD S4 91 144 - -
Bisa09g0366 229 CDD KOW_RPS4 161 194 IPR041982 -
Bisa09g0366 229 ProSitePatterns Ribosomal protein S4e signature. 40 54 IPR018199 -
Bisa09g0366 229 ProSiteProfiles S4 RNA-binding domain profile. 91 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa09g0366 Bisa-ChrBisa09 5272788 5275322 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa09g0366 34 152 Cytoplasmic Ribosomal Protein Gene Family AT2G17360 85.714 8.39e-72 215