LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa09g0331	ATGGCTTCTTGGGTTAGAGGCAAGTGCATCGGTAAGGGCGCGTTCGGCGCCGTGAGCGTTGGAGTTGCCAAATCCGACGGTCGGGTTTTCGCGGTGAAGTCCGTGGATCTCAAGACGGGATTCCCGGCTCAGGTGGAGGCTTTGGAGAATGAGATTCGGATTCTCCGGCGGGTGTCGCCGTCCCCTTACGTGGTGGAGTTCCTCGGCGACGACGTCACGGCGTCGTGTCGGAATTTGCACATGGATTACATGCCCGGTGGCACGCTTGCTGACCTGGCGTCTCGGAATGCTGACGTGGACGAGCGGTTAGTGAGGTACTACACATGGTGCCTCGTGAACGCGTTGAGGCACGTTCACTCGAGCGGCGTCGTTCACTGCGACGTGAAGGGGAGGAACGTTCTGGTGGGGCCCAACGGCTGCGTCGCGAAGCTCGCCGATTTCGGGTCAGCGGTGGAGGTCTCCAGCGAAGGTTGCGCCGCGGGGATTCTGCCACGTGGGAGCCCGCTGTGGATGGCTCCAGAGGTGATTCGGAGGGAGTATCAGGGGCCGGAGTCCGACGTGTGGTCACTGGGATGCACGGTGATCGAGATGGTCGGAGGGAAGCCGGCGTGGGAAGACGACGGGGGCGACACGCTAATTCGAATCGGGTACTCCGGCGAGGTGCCTGAGTTCCCGGGTCAATTGTCGGAGCTGGGACAGGATTTCCTCGAGAAGTGTCTAAGGACGGAACCGAAGCAGCGGTGGAGCTGCGATCAGCTGCTGCAGCACCCATTTTTGTACCCTGCTCCTCCCGAGACGCTTGTGTACTCGTCTCCTCGCTGCGTTCTCGACTGGGCCAGCTCAGACTTCACCGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAATCAAATTCAATGCCGAAAGCGCAGCTAAGGAAAGAATCAGTAAATTAGCCACAAAATTGAGGGTAAATTGGGAAACAGAAGGTTGGGTGGCGGTGAGGGGATTGGAATCGGAAACAGAGGATTTGGAAACAGGGGAGGGTGGTAGTGGGAGCGGGGACGAAGGAGAAGGGACAAGTTCGGAATATCCGGAATTGATAGGGGTAGAAGTGGGAAGAGAAGTATGTGAATATTGGGATAATAAAAAAATATCAAAAGATGAAAGGGCAAATTCGGAAATATGGGAATTGGGTGGCGCGAGGTGGTTGGAGAGGCGGTGTGGTCACAGGGAGTGCAGTGGTGTGAGCGTAGCTGGCTGGAGCTGTCGGTATGGGTCACAAAACGTTGACTTAGAAATGATAAGCACTTACAGATTGTGTTGTAAATTATTAAATTCACATTTTCTCAATTTATTGTCAATGTACTCAAATATATTATTTTCTTGGATTATAATCTATGCATTTCTCATGGACATGTGCCACAAACATGCTTTATGTAGGGGCCATTTATCTTGTGACAAACACAAGAAAACAAAGACACGTCACTGCAGCTCCCACATAACATAA	1488	0.5316	MASWVRGKCIGKGAFGAVSVGVAKSDGRVFAVKSVDLKTGFPAQVEALENEIRILRRVSPSPYVVEFLGDDVTASCRNLHMDYMPGGTLADLASRNADVDERLVRYYTWCLVNALRHVHSSGVVHCDVKGRNVLVGPNGCVAKLADFGSAVEVSSEGCAAGILPRGSPLWMAPEVIRREYQGPESDVWSLGCTVIEMVGGKPAWEDDGGDTLIRIGYSGEVPEFPGQLSELGQDFLEKCLRTEPKQRWSCDQLLQHPFLYPAPPETLVYSSPRCVLDWASSDFTEEEEEEEEEEEIKFNAESAAKERISKLATKLRVNWETEGWVAVRGLESETEDLETGEGGSGSGDEGEGTSSEYPELIGVEVGREVCEYWDNKKISKDERANSEIWELGGARWLERRCGHRECSGVSVAGWSCRYGSQNVDLEMISTYRLCCKLLNSHFLNLLSMYSNILFSWIIIYAFLMDMCHKHALCRGHLSCDKHKKTKTRHCSSHIT	495

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa09g0331	495	Pfam	Protein kinase domain	6	259	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa09g0331	495	MobiDBLite	consensus disorder prediction	330	357	-	-
	Bisa09g0331	495	Gene3D	Transferase(Phosphotransferase) domain 1	2	325	-	-
	Bisa09g0331	495	PANTHER	CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED	4	330	-	-
	Bisa09g0331	495	FunFam	Serine threonine protein kinase putative	2	312	-	-
	Bisa09g0331	495	CDD	STKc_MAPKKK	3	259	-	-
	Bisa09g0331	495	ProSitePatterns	Protein kinases ATP-binding region signature.	10	33	IPR017441	GO:0005524
	Bisa09g0331	495	SUPERFAMILY	Protein kinase-like (PK-like)	4	282	IPR011009	-
	Bisa09g0331	495	ProSiteProfiles	Protein kinase domain profile.	4	259	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa09g0331	495	SMART	serkin_6	4	259	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa09g0331	495	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	123	135	IPR008271	GO:0004672\|GO:0006468
	Bisa09g0331	495	Coils	Coil	286	306	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa09g0331	Bisa-ChrBisa09	4743480	4744967	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa09g0331	4	356	MAP Kinase Kinase Kinase	AT1G07150	57.423	1.19e-128	381

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE11	Bisa09g0331		Pkinase	2.1e-54	CL0016