Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa09g0321 ATGTGCAGTGGTTCTAAGAAGAAACCTTCTCAGGCAGGTTTGGTTATGGAGGGTGAATATGGGAAAGAAGAAGGGCTGCTTCACAAAACTTGTGTTTTGCTTGAACTGTCAGCCTCGGATGATTTAGTGGGTTTCAAAGATGCGGTTGAACAAGAGGGTCTTGATGTTGATGAGGTGGGTTTGTGGTATGGAAGGAGGATTGGGTCTAAGAAACTGAGTTTTGAAGAGAGGACACCTCTCATGATTGCTGCTATGTTTGGAAGCAAGGGCATATTGAGATATATAATCGGAACAGGTCGTGTTGATGTTAACAGGACTTGTGGATCAGATGGAGCCACTGCCCTTCATTGTGCTGTCAGTGGGGGTTCTGCTTCATCTCCTGAGGTTGTCAAGCTTCTTCTTGATGCCTGCGCAGATGTTAATGCTGTTGATGCTAATGGCAGCCGCCCCGGTGACTTGATTGTCTCTGGTGGTAGTTCTTCTATCTTCAATTCAAGGAAGAGGATAGTACAAGCCCTACTGAAAGGCACAGAGGTTACTGATGAGGCATCTCTGCCGTTTGACGAATCAGTTAGCCAAATGGAGGAGGAGCAGCAACATCAAGATATGACTACGCCTCGTGCTACAAAAGATGGGACCGAGAAGAAAGATTATCCTGTTGATCTTTCTCTCCCAGACATAAAGAGTGGGATATATGGTACTGATGAGTTTAGGATGTACACTTTCAAAGTGAAGCCTTGTTCAAGGGCTTACTCTCATGACTGGACTGAGTGCCCTTTTGTTCATCCTGGGGAAAATGCTAGGCGACGCGATCCAAGGAAGTATCATTATAGCTGTGTGCCTTGTCCAGAGTTCCGTAAGGGATCGTGCAGCAAAGGGGATGCCTGTGAGTATGCACATGGTATTTTTGAGTGCTGGCTTCACCCTGCTCAGTATCGGACACGGCTTTGCAAGGACGAGAGTGGATGCACCAGAAGAGTTTGCTTCTTTGCTCATAAGCCTGAGGAGCTTCGCCCCTTGTATGCTTCCACTGGTTCAGCTATACCTTCTCCAAGATCTTTCTCGTCTACTTCCTGTTCGTTGGATATGGGATCGCTTAGCCCTCTCTCACTCGGTTCTCCATCCGTCATGATACCCTCCACCTCAACACCACCTCTGACTCCTTCAGGCGCATCTTCTCCTGTGGGTGGAGCTATGTGGCAGACCCAGTCTAACGGGGGAGTCCCTACCCTGCTACTGCCAAGAAGCAGATTGATAACTGCTTCAAGTGCTAGAGATATCGATCTAGATATTGAATTGCTTGGTCTGGAAAATCATCGACGTAGGCAGCAGCTGATGATGGATGAGGTATCTGGCCTTTCCTCCCCGTCCGGCTGGAAGAATTCCATGTCTAATAACGCATCTTTTCCAGTTTCTTTGGGTGATCAAGCTGGAGACTTTAATAGGCTTGTAGGAGTGAAGCCTACTACTAACCTTGAAGACATTTTTGGGTCTCTTGATCCATCAATTTTGCCTAAATTACAGGGAATCTCACTAGATGCTGCTGTAGGGCCTCAGTTGCAATCTCCAACTGGAATCCAGGCGCTTCAGAATGCTGCAAATCCACATCTGCGAAGCTATTCTTCCAGCCTTTCCAATTCAAATGTGATGGGATCGCCTTCTTCTGTGAATGATCCATCTGCAGCCGCCGCCATGGCTTTGAATCCAAGACTCGCTGCCTTTTCTAAAAGGAGCCAGAGCTTTATTGAGCGTAGCATGGTGAACCGTCATCATCCGGAGCTTCCATCTCCAGTTTCTGCAGCAAAGAAGCCTTGTGCTTCCGCCTACTCGGATTGGGGCTCCCCTGATGGAAAATTGGACTGGGGCATCCATGGAGAAGAACTGAATAAGCTGAGGAAATCAGCTTCTTTTGGATTCCGAAGCAGTGGAAGCCCCCGAGTGGCATCAAATGTTGATGAACCAGATGTGTCTTGGGTTCATTCGCTGGTGAAGGATGCTCCGCCACCGCCACCGCCATCGGAATCCGGTCAATTTAACTGTGAAGAGAAGCAGATGCAGTGCCATCTTAACAATGGAACAGAGGCGGTTCCAGCATGGCTGGAGCAAGAGCCAATGGTAGCCTGA 2124 0.4821 MCSGSKKKPSQAGLVMEGEYGKEEGLLHKTCVLLELSASDDLVGFKDAVEQEGLDVDEVGLWYGRRIGSKKLSFEERTPLMIAAMFGSKGILRYIIGTGRVDVNRTCGSDGATALHCAVSGGSASSPEVVKLLLDACADVNAVDANGSRPGDLIVSGGSSSIFNSRKRIVQALLKGTEVTDEASLPFDESVSQMEEEQQHQDMTTPRATKDGTEKKDYPVDLSLPDIKSGIYGTDEFRMYTFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPEFRKGSCSKGDACEYAHGIFECWLHPAQYRTRLCKDESGCTRRVCFFAHKPEELRPLYASTGSAIPSPRSFSSTSCSLDMGSLSPLSLGSPSVMIPSTSTPPLTPSGASSPVGGAMWQTQSNGGVPTLLLPRSRLITASSARDIDLDIELLGLENHRRRQQLMMDEVSGLSSPSGWKNSMSNNASFPVSLGDQAGDFNRLVGVKPTTNLEDIFGSLDPSILPKLQGISLDAAVGPQLQSPTGIQALQNAANPHLRSYSSSLSNSNVMGSPSSVNDPSAAAAMALNPRLAAFSKRSQSFIERSMVNRHHPELPSPVSAAKKPCASAYSDWGSPDGKLDWGIHGEELNKLRKSASFGFRSSGSPRVASNVDEPDVSWVHSLVKDAPPPPPPSESGQFNCEEKQMQCHLNNGTEAVPAWLEQEPMVA 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa09g0321 707 Gene3D - 115 176 IPR036770 -
Bisa09g0321 707 SUPERFAMILY Ankyrin repeat 71 162 IPR036770 -
Bisa09g0321 707 ProSiteProfiles Ankyrin repeat profile. 110 145 IPR002110 GO:0005515
Bisa09g0321 707 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 281 301 IPR000571 GO:0046872
Bisa09g0321 707 SMART ANK_2a 75 105 IPR002110 GO:0005515
Bisa09g0321 707 SMART ANK_2a 110 142 IPR002110 GO:0005515
Bisa09g0321 707 PANTHER UNKEMPT FAMILY MEMBER 35 666 IPR045234 -
Bisa09g0321 707 MobiDBLite consensus disorder prediction 190 217 - -
Bisa09g0321 707 Pfam Ankyrin repeats (3 copies) 71 144 IPR002110 GO:0005515
Bisa09g0321 707 Gene3D - 31 114 IPR036770 -
Bisa09g0321 707 Gene3D - 277 339 - -
Bisa09g0321 707 ProSiteProfiles Zinc finger C3H1-type profile. 281 303 IPR000571 GO:0046872
Bisa09g0321 707 MobiDBLite consensus disorder prediction 193 217 - -
Bisa09g0321 707 ProSiteProfiles Ankyrin repeat region circular profile. 110 144 - -
Bisa09g0321 707 SMART c3hfinal6 276 302 IPR000571 GO:0046872
Bisa09g0321 707 SMART c3hfinal6 311 334 IPR000571 GO:0046872
Bisa09g0321 707 FunFam Zinc finger CCCH domain-containing protein 66 234 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa09g0321 Bisa-ChrBisa09 4554034 4556157 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa09g0321 28 669 C2H2 Transcription Factor Family AT5G12850 40.296 2.54e-140 426
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bisa09g0321 Ank_4 3.7e-09 CL0465