Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa09g0273 ATGATGTATTCAAGGAGATCAAGGTATTCTCCTTCACCTTCTCCATACAAGCGTTATGGTAGGTCTGTCTCCAGGTCTCTGTCAAGGTCAAGATCTAGAAGCCTGTCAAGGAGCCCTTCAAGAGATGCAGAGAATCCTGGTAACAATTTGTATGTGACAGGCTTGTCTCCTCGGATCACCAAGAGAGAACTGGAGAAGCATTTTTCAACTGAGGGAAAAGTGATTGATGTACATCTGGTTGTTGATCCATGGACAAGAGAGTCACGAGGATTTGGATTTGTGACTATGGAAACTGTTGAGGCGGCTGACCAATGCGTAAAGTATCTGAATCGCTCTGTTATTGAAGGGCGTGTCATCACAGTGGAGAAGTTTCTGTGGCAGCAGATCATTGGGGCTAGAAGACGACGGGGTCGAACTCCAACACCAGGGAAGTATCTTGGGCTGAGGACTATTCGTGGGCGACGCCGCTCTCCAAGCTACTCTCCTCGCCGCTCTCCTACTTACTCTCCTTACAGAAGAAGCTATAGTCGTTCACCATATTCTTCAGATCGTAGTAGGAGTCGTTCTTATTCTCCTTACCACAGCCGGCGGGTGTCATATTCTCCTTACAGCCGAAGGAGGTCCTACTCTTATTATAGTCGCCGCAGATCTTATTCACCCTATGATCGGCACAGATCTTATTCTCCTTATGATCGGCAGAGGTCCTATTCTCCATATGATCAACGCAGGTCATACTCTAGGTCTCGCTCCCCTTACAGCAGGTCACCTGTCAGTAGGCGTGACAGATCATACTCTCCGTATGACTCACCTGATGATCGCTACTACAGAAGGCACCGATATAGGTCCATTTCTCGAAGTGTGTCACCAAGGCATAGGAGAAGTTCAAGGAGGAGGTACTCGCCCATTGTCTCTTCTGTGAGGAGGAGGAGGAGGAGCACAAGAAGAAGCTACTCGCCAAGTGTTTCTCCAAGACCAAGGAGGAGTTCACGGAGGAGTTATTCTCGCAGCATCTCGCCAAGGCCTAGAAGCAGTAAAAGGAGTGGTGGTTTTTCAAAACGTGGGCATACACCTGATAGGGATAGAAGCTACTCGAGAACTCCTAGTGTGAGTGCAAGTTCTAGATCAGTATCTAGATCTGTTACTCCTAGATCTGTTTCTTCTTGA 1164 0.4785 MMYSRRSRYSPSPSPYKRYGRSVSRSLSRSRSRSLSRSPSRDAENPGNNLYVTGLSPRITKRELEKHFSTEGKVIDVHLVVDPWTRESRGFGFVTMETVEAADQCVKYLNRSVIEGRVITVEKFLWQQIIGARRRRGRTPTPGKYLGLRTIRGRRRSPSYSPRRSPTYSPYRRSYSRSPYSSDRSRSRSYSPYHSRRVSYSPYSRRRSYSYYSRRRSYSPYDRHRSYSPYDRQRSYSPYDQRRSYSRSRSPYSRSPVSRRDRSYSPYDSPDDRYYRRHRYRSISRSVSPRHRRSSRRRYSPIVSSVRRRRRSTRRSYSPSVSPRPRRSSRRSYSRSISPRPRSSKRSGGFSKRGHTPDRDRSYSRTPSVSASSRSVSRSVTPRSVSS 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa09g0273 387 SUPERFAMILY RNA-binding domain, RBD 36 143 IPR035979 GO:0003676
Bisa09g0273 387 MobiDBLite consensus disorder prediction 1 52 - -
Bisa09g0273 387 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 48 122 IPR000504 GO:0003723
Bisa09g0273 387 Gene3D - 4 125 IPR012677 -
Bisa09g0273 387 CDD RRM_SF 50 122 - -
Bisa09g0273 387 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 40 310 - -
Bisa09g0273 387 SMART rrm1_1 49 122 IPR000504 GO:0003723
Bisa09g0273 387 MobiDBLite consensus disorder prediction 160 208 - -
Bisa09g0273 387 MobiDBLite consensus disorder prediction 264 278 - -
Bisa09g0273 387 MobiDBLite consensus disorder prediction 231 262 - -
Bisa09g0273 387 MobiDBLite consensus disorder prediction 136 387 - -
Bisa09g0273 387 MobiDBLite consensus disorder prediction 279 315 - -
Bisa09g0273 387 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 50 119 IPR000504 GO:0003723
Bisa09g0273 387 MobiDBLite consensus disorder prediction 363 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa09g0273 Bisa-ChrBisa09 3859799 3862864 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa09g0273 49 117 Eukaryotic Initiation Factors Gene Family AT2G36660 36.232 6.28e-07 49.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa09g0273 09 3859799 3862864 Bisa09g0273 09 3859799 3862864 ECH