LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa09g0143	ATGCATGGATCAAGTGTCATGATTGGATTGTTCTTACCTTTGAAATGGTTTTTGGATTATACCAAATGTGTAGGATGTAATGGAACTAGAAAACGGTCAAAAGACGATGAGATTACTGAAGGAAAGGATTCAATATTAGAAGATAGCAAATGTAGCAAAGCACTAGAGAAAGCATCAAGATTCCATTCAGAATATCCATTTTTCATACGTTCAATGACCTCATCATATGCTTATGGCAGTCCTGTGACAGTGTTAGTGGTGCCTAGCACTCTACTGTGCAGCATAACCCGAGAGAGGATCAAGGCACTTCCATTACCAAAGTACTTACCAAAAGAGTTCGTGAAGAGGTATATCCGATGTCATCGACAAGATGTGAGATTGCAAGTTGGGGAAAAATCAGGGGCATTGAAAGTGCAGTGTTCTTCAAACTATTGGAGATTCTCTAGAAGTTGGCCTAAGTTTGCGAGGGAATGCAATTTGAAGGAAGGAAACATTAGTTTCTTTGAGCTCATCGATCACCAAAATCTTGTGCTCAGAAAAATTCCAACCAGTTTCGTGAGGAAATATTGGAAAGGATTATCAAACCCAGTAACGCTGAGCCTTCCGAATGGTGACGAGTGGAAAGTTAATTGGATAGAACATGATGATGGGGGTGTTTGGTTCAGAGGTGGTTGGAAAAAATTTGCAGATTACTATAAAATAGCTGAAGGGCATTTATTGATGTTTAGGTATGAATTAGGAATTAGATCTCGTTTTCAGGTTATCATATTTGATAAGAGTGCCTCAGAAATAGACTATCCTGCTTCTGTAAGAGACATAGTTCATATTGATGATGATGATGATGATTGTGAAGAGGTCAAACTTGGACAAGAAAGTGATGATGATGATGATGATGACGATGATAAGGAGAGTCTTGATGAAAGGCCAGTTAGATATGATGATAATAATTGTGAAGAGGTCAAACTTGAACAAGAAAGTGATGATGATGATGATGAGGCGAGTCATGATGGAAGGCCAGTTAGACTTAGATCATCTCCATCAACGCAACCCAGTAAGAAGATGAAAACCAATTCCCCTAATGAAGAGCCTTCAAGCTTCTTCAAGCCACGTGATGGAACTGTTCCAAGGGCAAAACATCACCTGAACACAAGAGGATGTAATAGAACTAAAAAACGGTCAGAAGACGATGAGGTTACTAATGGAAAGGCTTCTGTTGGGTTTGACTTGAATTTTGTGGGTGACCCGTCTAAAGAGCTGAAGAGAAGAGTCTCTAGTTCTAATGAGGATGGTGCAGAAGCAGCTTCAATATTAGAAGATAGCAAATGTAGCAGAGCACTAGAGAGAGCATCAAGATTCCGTTCAGAGTATCCATTTTTCATACGTTCAGTGACCTCATCATCTGCTTATGGCAGTCCTTTGGACAATCATTTGGAAGAAGGCGACGTTTGTGCCTTTGAGATGATTTTTCGACGTGCTACCACACAAGTTTTATTCAATGTTGTTATTTTTCGTGTCACTTCACAAGAACCAACCCCTTCTATTACAAATTTATATTCTATGCATGGCTTTACTACCCAACATGATTCTAGTGTTCCTAACATTGTACCATACATGGAAGCCGGAGTGGGACCCACATTGACCCCACATTTCCCGAACAATGTTGGTGGTACCCAGCACTCTATTGAGCAACATAACCCAAGAGAGGATCAAGGTGTTTCCATTACCAAAGACTCTGAAATTCTTGAAGCTTCAAGGAAGTTTGATGAGTCAGAGAACTGCTTCAAGATTGTTATGAGGAGTCTCACGCAACGAAAGTTCGTGAAGAGGTATATCCGATGTCATCGACAAGATGTGAGATTGCAAGCTGGGGAAAAATCATGGGCATTGAAAGTGGTGTGTTCTTCAAACTACTGGAAATTCTCTGGTGGTTGGGCTAAGTTTGCGAGGGAATGCAATTTGAAGGAAGGAAACATTTGTTTCTTTGAGCTCATTGATCACCAAAATCTTGTGCTCAAAGTCTCCATTTCAAGAGATTGA	2037	0.4016	MHGSSVMIGLFLPLKWFLDYTKCVGCNGTRKRSKDDEITEGKDSILEDSKCSKALEKASRFHSEYPFFIRSMTSSYAYGSPVTVLVVPSTLLCSITRERIKALPLPKYLPKEFVKRYIRCHRQDVRLQVGEKSGALKVQCSSNYWRFSRSWPKFARECNLKEGNISFFELIDHQNLVLRKIPTSFVRKYWKGLSNPVTLSLPNGDEWKVNWIEHDDGGVWFRGGWKKFADYYKIAEGHLLMFRYELGIRSRFQVIIFDKSASEIDYPASVRDIVHIDDDDDDCEEVKLGQESDDDDDDDDDKESLDERPVRYDDNNCEEVKLEQESDDDDDEASHDGRPVRLRSSPSTQPSKKMKTNSPNEEPSSFFKPRDGTVPRAKHHLNTRGCNRTKKRSEDDEVTNGKASVGFDLNFVGDPSKELKRRVSSSNEDGAEAASILEDSKCSRALERASRFRSEYPFFIRSVTSSSAYGSPLDNHLEEGDVCAFEMIFRRATTQVLFNVVIFRVTSQEPTPSITNLYSMHGFTTQHDSSVPNIVPYMEAGVGPTLTPHFPNNVGGTQHSIEQHNPREDQGVSITKDSEILEASRKFDESENCFKIVMRSLTQRKFVKRYIRCHRQDVRLQAGEKSWALKVVCSSNYWKFSGGWAKFARECNLKEGNICFFELIDHQNLVLKVSISRD	678

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa09g0143	678	Pfam	B3 DNA binding domain	180	259	IPR003340	GO:0003677
	Bisa09g0143	678	MobiDBLite	consensus disorder prediction	387	401	-	-
	Bisa09g0143	678	Gene3D	-	178	261	IPR015300	-
	Bisa09g0143	678	MobiDBLite	consensus disorder prediction	286	401	-	-
	Bisa09g0143	678	Gene3D	-	572	678	IPR015300	-
	Bisa09g0143	678	Gene3D	-	46	177	IPR015300	-
	Bisa09g0143	678	CDD	B3_DNA	604	677	IPR003340	GO:0003677
	Bisa09g0143	678	MobiDBLite	consensus disorder prediction	286	303	-	-
	Bisa09g0143	678	CDD	B3_DNA	181	258	IPR003340	GO:0003677
	Bisa09g0143	678	SUPERFAMILY	DNA-binding pseudobarrel domain	594	676	IPR015300	-
	Bisa09g0143	678	SUPERFAMILY	DNA-binding pseudobarrel domain	179	260	IPR015300	-
	Bisa09g0143	678	ProSiteProfiles	B3 DNA-binding domain profile.	625	678	IPR003340	GO:0003677
	Bisa09g0143	678	PANTHER	B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED	183	468	IPR044837	-
	Bisa09g0143	678	ProSiteProfiles	B3 DNA-binding domain profile.	164	260	IPR003340	GO:0003677
	Bisa09g0143	678	MobiDBLite	consensus disorder prediction	304	319	-	-
	Bisa09g0143	678	SUPERFAMILY	DNA-binding pseudobarrel domain	108	175	IPR015300	-
	Bisa09g0143	678	SMART	B3_2	593	676	IPR003340	GO:0003677
	Bisa09g0143	678	SMART	B3_2	167	260	IPR003340	GO:0003677
	Bisa09g0143	678	MobiDBLite	consensus disorder prediction	341	364	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa09g0143	Bisa-ChrBisa09	1621637	1633159	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa09g0143	167	325	B3 DNA Binding Superfamily	AT4G01580	33.540	1.90e-17	79.3

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	B3	Bisa09g0143		B3	1.3e-08	CL0405