Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa09g0141 ATGCAGTACTTACCAAAAGAGTTCGTGAAGAGGTATATCCAATGTCATCGACAAGATGTGAGATTGCAAGTTGGGGAAAAATCATGGGCCATGATAGTGCTGTGTTCTTCATACTATTGGAGATTCTCTAGAGGTTGGCCTAAGTTTGCGAGGGAATGCAATTTGAAGGAAGGAAACATATGTTTCTTTGAGCTCATCGATCACCAAAATCTTGTGCTCAAGAATGGAAAGCAAAATTTGGATGTAGACGATGTAACTTACTGCAATACAAAGGCCTCGTCAAAGGGATGGAGATTGGCTGATGGTGAGACGATGGAGATTGGTGATGATGGAATTAGAGAAGACGATGGAGATAGGCCAACGATAACGAAGATTGAGAAGCACGATCTGGATTCTGGAGATTGGGAGATGGTTAATGATATAGCAATCAGATCTCAGATGACGAAAGTGACAATAGAGACGTCAATTTCAGATTTTAAGATTCCAACAAGTTTCGTGAGGAAATATTGGAAAGGATTATCAAACCCAGTAGCGCTGAGCCTTCCGAATGGTGACGAGTGGAAAGTAAATTGGATAGAACGTGATGATGGGGATGTTTGGTTCAGAGGTGGCTGGAAAAAATTTGCAGATTACTATCAAATAGCTGAAGGGCATTTGTTGATGTTTAGGTATGAATTAGGAATTAGATCTCATTTTCAGGTTACCATATTTGATAAGAGTGCCTCAGAAATAGACTACCCTGCTTCTGTAAGAGACATAGTTCATATTGATGATGACGAAGAGGTCAAACTTGACCAAGGAAGTGACGATGATGAGGAGAATCATGATGAAAGGCCAGTTAGATATGATGATGATGATTGTGAAGAGGTCAAACTTGAACAAGGAAGTGATGATGATGAGAAGGAGGAGGAGAGTCATGATGAAAGGCCAGTTAGATTATCTCCATCAATGCAACCTCGTAAAAAGATGAAAATCAATTTCCATAATGAAGAGCCTTCAAGCTTCTTCAAGCCACGTGATGGAACTGATCCAAGGGCAAAACATCACCACAACACAAGAGGACGTGATGGGACTAGAAAAGGGTCAAGAGACGATGAGGTTACTGAAGGGAAGGCTTCAATATTAGAAGATGAAAAACATAGCGCAGCACTAGACAGAGCAAAAAGATTCCGTTCAAAGTATCCATTTTTCATACGTACAATGCGCTCATCATATGTTCATGGCGGTTCAATGAGCGCTCTGCTTACAAGAGGTTGGAGATTATTTGCAGAGGACAATCATTTGGAAGTAAACGATGCATGTGTCTTTGAGATGATTAACCATGCCACCACTCAACTTTCATTCAATGTTGTCATCTTCCGAGCCACATTACAAGCACAAACCCCTTCCATAACTAAAGCCACAGACTCTAACATTTCTGAAGCTTCAAGAAAACATGATGAGGAGTCAAAAGATTGCCTCAAGATTGCTATGAACGAGCGCCACACAAAGATGTATGTAGGTCCGTACATACCAAAAGAGTTCCTGCAGAGATATGTGAGAGGTGTTGGATACGATATTGTGAGATTGCAAGTTGGGGAAAAGTCATGGGCAACCAAAGTTGTGTATAATAATCGTGGCGCTGGGCAATTCTCTGCAGGTTGGCCTAAGTTTGCGAGGGAATGCAATTTGAAGAAAGGACACGTTATCTGA 1692 0.4119 MQYLPKEFVKRYIQCHRQDVRLQVGEKSWAMIVLCSSYYWRFSRGWPKFARECNLKEGNICFFELIDHQNLVLKNGKQNLDVDDVTYCNTKASSKGWRLADGETMEIGDDGIREDDGDRPTITKIEKHDLDSGDWEMVNDIAIRSQMTKVTIETSISDFKIPTSFVRKYWKGLSNPVALSLPNGDEWKVNWIERDDGDVWFRGGWKKFADYYQIAEGHLLMFRYELGIRSHFQVTIFDKSASEIDYPASVRDIVHIDDDEEVKLDQGSDDDEENHDERPVRYDDDDCEEVKLEQGSDDDEKEEESHDERPVRLSPSMQPRKKMKINFHNEEPSSFFKPRDGTDPRAKHHHNTRGRDGTRKGSRDDEVTEGKASILEDEKHSAALDRAKRFRSKYPFFIRTMRSSYVHGGSMSALLTRGWRLFAEDNHLEVNDACVFEMINHATTQLSFNVVIFRATLQAQTPSITKATDSNISEASRKHDEESKDCLKIAMNERHTKMYVGPYIPKEFLQRYVRGVGYDIVRLQVGEKSWATKVVYNNRGAGQFSAGWPKFARECNLKKGHVI 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa09g0141 563 ProSiteProfiles B3 DNA-binding domain profile. 144 240 IPR003340 GO:0003677
Bisa09g0141 563 Gene3D - 464 563 IPR015300 -
Bisa09g0141 563 Gene3D - 407 456 IPR015300 -
Bisa09g0141 563 Gene3D - 1 75 IPR015300 -
Bisa09g0141 563 Pfam B3 DNA binding domain 157 239 IPR003340 GO:0003677
Bisa09g0141 563 Pfam B3 DNA binding domain 403 455 IPR003340 GO:0003677
Bisa09g0141 563 MobiDBLite consensus disorder prediction 258 373 - -
Bisa09g0141 563 ProSiteProfiles B3 DNA-binding domain profile. 415 456 IPR003340 GO:0003677
Bisa09g0141 563 SUPERFAMILY DNA-binding pseudobarrel domain 502 563 IPR015300 -
Bisa09g0141 563 CDD B3_DNA 161 238 IPR003340 GO:0003677
Bisa09g0141 563 Gene3D - 143 241 IPR015300 -
Bisa09g0141 563 ProSiteProfiles B3 DNA-binding domain profile. 504 563 IPR003340 GO:0003677
Bisa09g0141 563 ProSiteProfiles B3 DNA-binding domain profile. 1 79 IPR003340 GO:0003677
Bisa09g0141 563 SUPERFAMILY DNA-binding pseudobarrel domain 3 70 IPR015300 -
Bisa09g0141 563 SUPERFAMILY DNA-binding pseudobarrel domain 391 455 IPR015300 -
Bisa09g0141 563 CDD B3_DNA 405 454 IPR003340 GO:0003677
Bisa09g0141 563 MobiDBLite consensus disorder prediction 357 373 - -
Bisa09g0141 563 SMART B3_2 1 79 IPR003340 GO:0003677
Bisa09g0141 563 SMART B3_2 335 456 IPR003340 GO:0003677
Bisa09g0141 563 SMART B3_2 147 240 IPR003340 GO:0003677
Bisa09g0141 563 SUPERFAMILY DNA-binding pseudobarrel domain 149 240 IPR015300 -
Bisa09g0141 563 MobiDBLite consensus disorder prediction 323 350 - -
Bisa09g0141 563 PANTHER B3 DOMAIN-CONTAINING 27 69 - -
Bisa09g0141 563 MobiDBLite consensus disorder prediction 273 288 - -
Bisa09g0141 563 MobiDBLite consensus disorder prediction 289 304 - -
Bisa09g0141 563 CDD B3_DNA 3 67 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa09g0141 Bisa-ChrBisa09 1602158 1610062 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa09g0141 1 74 B3 DNA Binding Superfamily AT3G18990 36.486 1.20e-10 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Bisa09g0141 B3 4.7e-09 CL0405