Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa09g0140 ATGCAGGAGATAACGTACCAGTTTGGAGAAAAGCTAAAGATAACTGTTTGGGTGAAAGAAAAGAAGCATCTGAATCCAAAAGCTTCCCAAATGAGTGTTCCAAGACGTTTCGTGAAAAAATATTGGAAAGAATTTTCAAACCCGGTCGTGCTGAGCCTTCCAAATGGCGATGAGTGGAAAGTAGACTGGATAGAGCGTGATGGGGGTGTTTGGTTCAGAGGTGGCTGGAAAAAATTTGCAGATTACTATAAAATAGTTGATGGGCATTTCTTGGTTTTTAAATACGAAGGAACTGAATCTCATTTTCAAGTAATCATGTTTGATAAGAGTGCCTCAGAAATAGACTACCCTGCTACTGTAAGAGAAGTAGTTGAAATTGATGATGATGATGATGATGATGGTCGTGAAGAGGTCAAACTTGGACAAGAAATTGATGATGAGGAGGAGAGTGATGAAAGGCCAGTTAGATTATCTCCATCAATGCAACCTCGGAAGAAGATGAAAACCAAGTTCCCTAATGAAGATCCTTCAAGCTTCTTCAAGCCACGTGATGGAGCTGATCAAAGGGCAGAGCATAACGAGAACACAAGAGGTTGTAATAGAACTAGAAAACGGTCAAAAGACGATGAGGTTACTGAAGGAAAGGCTTCGATATTAGAGAGAGCAAGAAGATTCCATTCAGAGTATCCATTTTTCATACGTTCAGTGACCTCATCATATGCTAATGGCAGTCCAGTGGACAATCATTTGGAAGAAGGCGATGTTTGTGCCTTTGAGATGATTAATCGACGTGCTACTACACAAGTTTCATTCAACGTCGTTATTTTTCGTGTCACTTCACAAGAACCAACCCCTTCCATTGTTAAAGACTCTGAAATTCTTGAAGCTTCAAGGAAGTTTGATGAGTCAGAGAACTGCTTCAAGATTGTTATCAGGGAGTCTCACGCAACGAAGTATGTAGGGCCGTACTTACCAAAAGAGTTCGTGAAGAGGTATATACGATGTCATCGACAAGATGTGAGATTGCAAGCTGGGGAAAAATCATGGGCATTGAAAGTGAGGCAGTCAGAAACCCTAACCCTAAGCCATATTCACAGAGAAGGGAATGCTGCTACAGATTTGAAGGGAATTGCTTTCCCGATGTATGAAGGAATTAGATCTCATTTTCAGGTTATCATATTTGATAAGAGTGCCTCAGAAATAGACTACCCTGCTTCTGTAAGAGACGTAGTTCATATTGATGATGATGATAATGATGTTGATGATTGTGAAGAGGTCAAACTTGAACAAGAAAGTGATGAGGATGATGATGATGAGGAGGAGGAGGAGGAGGAGAGTCATGATGCAAGGCCAGTTAGATTATCTCCATCAATGCAACCTCGTAAAAAGATGAAAACCAATTTCCCTAATGAAGAGCCTTCAAGCTTCTTCAAGCCACGTGATGGAACTGATCCAAGGGCAAAGCATCACGAGAACTCAAGAGACTTTGAAATTCTTGAAGCTTCAAGGTGTTAG 1515 0.4079 MQEITYQFGEKLKITVWVKEKKHLNPKASQMSVPRRFVKKYWKEFSNPVVLSLPNGDEWKVDWIERDGGVWFRGGWKKFADYYKIVDGHFLVFKYEGTESHFQVIMFDKSASEIDYPATVREVVEIDDDDDDDGREEVKLGQEIDDEEESDERPVRLSPSMQPRKKMKTKFPNEDPSSFFKPRDGADQRAEHNENTRGCNRTRKRSKDDEVTEGKASILERARRFHSEYPFFIRSVTSSYANGSPVDNHLEEGDVCAFEMINRRATTQVSFNVVIFRVTSQEPTPSIVKDSEILEASRKFDESENCFKIVIRESHATKYVGPYLPKEFVKRYIRCHRQDVRLQAGEKSWALKVRQSETLTLSHIHREGNAATDLKGIAFPMYEGIRSHFQVIIFDKSASEIDYPASVRDVVHIDDDDNDVDDCEEVKLEQESDEDDDDEEEEEEESHDARPVRLSPSMQPRKKMKTNFPNEEPSSFFKPRDGTDPRAKHHENSRDFEILEASRC 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa09g0140 504 CDD B3_DNA 29 108 IPR003340 GO:0003677
Bisa09g0140 504 ProSiteProfiles B3 DNA-binding domain profile. 16 110 IPR003340 GO:0003677
Bisa09g0140 504 MobiDBLite consensus disorder prediction 427 445 - -
Bisa09g0140 504 MobiDBLite consensus disorder prediction 427 504 - -
Bisa09g0140 504 SUPERFAMILY DNA-binding pseudobarrel domain 17 110 IPR015300 -
Bisa09g0140 504 Pfam B3 DNA binding domain 27 109 IPR003340 GO:0003677
Bisa09g0140 504 MobiDBLite consensus disorder prediction 477 504 - -
Bisa09g0140 504 MobiDBLite consensus disorder prediction 126 214 - -
Bisa09g0140 504 MobiDBLite consensus disorder prediction 126 150 - -
Bisa09g0140 504 PANTHER B3 DOMAIN-CONTAINING 301 463 - -
Bisa09g0140 504 Gene3D - 14 111 IPR015300 -
Bisa09g0140 504 Gene3D - 288 396 IPR015300 -
Bisa09g0140 504 SMART B3_2 19 110 IPR003340 GO:0003677
Bisa09g0140 504 MobiDBLite consensus disorder prediction 180 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa09g0140 Bisa-ChrBisa09 1583346 1593603 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa09g0140 30 150 B3 DNA Binding Superfamily AT1G49475 42.623 4.86e-18 80.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Bisa09g0140 B3 5.6e-12 CL0405