Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa09g0116 ATGAGCACATCCTCGGTTTTCCTTCTCTGAGAACAGATGGAATCAGATCTTGGTAAGCTCTTCATTGGAGGGATTTCTTGGGATACTGATGAAGAACGTCTTAAAGAATACTTTGGGAAATATGGAGAGGTGATAGAGGCCGTGATCATGAGAGATCGCACAACAGGTCGTGCTCGTGGTTTCGGTTTTGTTGTGTTTGCTGATCCTGCAGTTGCTGAAAGAGTCATTATGGAGAAGCACATAATTGATGGCCGCACAGTTGAAGCAAAGAAAGCTGTTCCCAGGGATGATCAGCATGCTGTAAATAGAAACTCTGGCAGTGTCCATGGCTCTCCTGGTCCTGGCCGCACAAAAAAGATTTTTGTTGGAGGTTTACCATCAAATATCACTGAAAGTGAATTTAAGAAGTATTTTGATCAGTTTGGCACAATTAATGATGTTGTAGTAATGTATGATCACAATACCCAGAGGCCAAGAGGCTTTGGCTTCATCACTTATGATTCAGAAGAAGCTGTGGACAGAGTTCTTTATAAAACATTTCATGAACTCAATGGAAAAATGGTTGAGGTTAAGAGGGCAGTTCCAAAAGAGCTTTCCCCTGGACCCACTCGAAGCCCTTTGTTAGGAACTAATTACGGTGGTTTTAATAGGGCCAGTAACTATCTTAACAGTTATGCTCAGAGTTATAATATGAGTCCAATTGGAGGCTATGGAATGAGGATGGATGGTAGGTTTAGTCCTCTTACAAGTGGCAGAAGTGGATTTTCTCCATTTGGCACCAGTGCTTATGGAATGGGACTGAATTTGGATGCAGGATTGAGCCCAGGCTATGGTGGAACCTCCAATTATGGGAGCAATCTAGGATATGGTCGGATGATTAGTCCTTTTTACAATGGCAACTCAAGCAGATATACCACTCCTATAGGTTATAGTGGAGCTAATGCGAGAACTGATTCTCTTATGAACTCAACTTCTCGAAATCTCTGGGGAAATGGCAGCCTAAACAATGTTAATAACCCAGCGAGTACAAGCGCTTACTTGGGATCTGGAAGTGGGAATTTTGGTGTTTCAATTAAAAATAATGGCACAAATTGGGGTCAATCCACTCCATCTCAGGGCGGAGTGGCTGCTTCTGGTTATACCACTGGGATTAATGTTTATGAAGGTGGAGATAGTAGCTTTGGGTTAGGAGGTGGAGGGTATGGAAGAAATGGCAGTTTAGGTGTAAATCCATCCTCCACATTTACTGCATCAACTGGTGGATATGAAGGATCCTATGGGGACTTGTACCACAATGGTTCAGCTTATAGTGACTCAACTTGGCGGTCTGCTGCTTCTGACCTAGATGGTTCTGGCTCTTTTGGTTATGGACTTGGTGCTATGGCCTCAGAGGAGCCGGTGAAGAGTTCAGAGGGTTATATTGGAAACTACAGTGTTACAAGCAGACAAACTAATAGAGGAATCGCTGCCTAG 1473 0.4331 MSTSSVFLLXEQMESDLGKLFIGGISWDTDEERLKEYFGKYGEVIEAVIMRDRTTGRARGFGFVVFADPAVAERVIMEKHIIDGRTVEAKKAVPRDDQHAVNRNSGSVHGSPGPGRTKKIFVGGLPSNITESEFKKYFDQFGTINDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTFHELNGKMVEVKRAVPKELSPGPTRSPLLGTNYGGFNRASNYLNSYAQSYNMSPIGGYGMRMDGRFSPLTSGRSGFSPFGTSAYGMGLNLDAGLSPGYGGTSNYGSNLGYGRMISPFYNGNSSRYTTPIGYSGANARTDSLMNSTSRNLWGNGSLNNVNNPASTSAYLGSGSGNFGVSIKNNGTNWGQSTPSQGGVAASGYTTGINVYEGGDSSFGLGGGGYGRNGSLGVNPSSTFTASTGGYEGSYGDLYHNGSAYSDSTWRSAASDLDGSGSFGYGLGAMASEEPVKSSEGYIGNYSVTSRQTNRGIAA 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa09g0116 490 CDD RRM1_hnRNPA_hnRNPD_like 20 90 - -
Bisa09g0116 490 FunFam Heterogeneous nuclear ribonucleoprotein 1 17 99 - -
Bisa09g0116 490 MobiDBLite consensus disorder prediction 95 119 - -
Bisa09g0116 490 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 13 486 - -
Bisa09g0116 490 SUPERFAMILY RNA-binding domain, RBD 12 116 IPR035979 GO:0003676
Bisa09g0116 490 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 86 IPR000504 GO:0003723
Bisa09g0116 490 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 120 178 IPR000504 GO:0003723
Bisa09g0116 490 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 94 IPR000504 GO:0003723
Bisa09g0116 490 FunFam Heterogeneous nuclear ribonucleoprotein 1 115 202 - -
Bisa09g0116 490 SUPERFAMILY RNA-binding domain, RBD 116 219 IPR035979 GO:0003676
Bisa09g0116 490 CDD RRM2_Hrp1p 119 196 - -
Bisa09g0116 490 Gene3D - 18 100 IPR012677 -
Bisa09g0116 490 SMART rrm1_1 19 90 IPR000504 GO:0003723
Bisa09g0116 490 SMART rrm1_1 119 191 IPR000504 GO:0003723
Bisa09g0116 490 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 118 195 IPR000504 GO:0003723
Bisa09g0116 490 Gene3D - 117 197 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa09g0116 Bisa-ChrBisa09 1306861 1309911 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa09g0116 17 192 Eukaryotic Initiation Factors Gene Family AT2G23350 23.596 1.85e-08 55.1