LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa09g0068	ATGAGGAGGGGCAGAGGAGCCGCTGCTGTCAAACCGGCGGTGGCGGCGGTTGAACTCCCCGGATCCGGTCCAAGGCCGATTTTAAAAGAGCCGAGGTACCGGGGCGTGAGAAAGAGGCCATGGGGTAGATTCGCCGCCGAGATCAGAGACCCCTTGAAGAAAGCTCGTGTCTGGCTCGGCACCTTCGACTCCGCCGAGGAGGCGGCCCGAGCCTATGACGCCGCCGCTCGAGCCCTCCGTGGCCCCAAGGCCAAGACCAATTTCCCTCTTTCTCCTTCTTCTCTCTCGCCGTTCTGCTACCCTCACACCAACCAGAACGTCAACGACGACGTTTTGGACCGCCGGTTGTACGTCGCCGGGAACAACTGCTTCCAAGAGCACCAGATTCACCCTCAGATGCCCGCTACCAGTAGCATGAGCAGCACATCCTACAGCGGACCGCGTCCGCCGTCGGCAACTGCGGCAGTCTCAACCCGGAGATATCCCCGGACGCCGCCGGTGATGCCGGAGGATTGCCACAGCGACTGCGATTCGTCGTCATCGGTGATCGATGGCGACGGCGACTGCGATGGCTGCGATTTCGCGTCGTCGTCGGCGTTCCGTCAACCGTTGCCTTTCGATCTCAATTTCCCACCGTTGGATGGTGCGGACGTGGTGGTTGATGATCTACACTGTACCGCTCTCTGCCTCTGA	693	0.6147	MRRGRGAAAVKPAVAAVELPGSGPRPILKEPRYRGVRKRPWGRFAAEIRDPLKKARVWLGTFDSAEEAARAYDAAARALRGPKAKTNFPLSPSSLSPFCYPHTNQNVNDDVLDRRLYVAGNNCFQEHQIHPQMPATSSMSSTSYSGPRPPSATAAVSTRRYPRTPPVMPEDCHSDCDSSSSVIDGDGDCDGCDFASSSAFRQPLPFDLNFPPLDGADVVVDDLHCTALCL	230

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa09g0068	230	FunFam	Ethylene-responsive transcription factor 2	32	90	-	-
	Bisa09g0068	230	CDD	AP2	31	91	IPR001471	GO:0003700\|GO:0006355
	Bisa09g0068	230	ProSiteProfiles	AP2/ERF domain profile.	32	89	IPR001471	GO:0003700\|GO:0006355
	Bisa09g0068	230	MobiDBLite	consensus disorder prediction	129	152	-	-
	Bisa09g0068	230	SMART	rav1_2	32	95	IPR001471	GO:0003700\|GO:0006355
	Bisa09g0068	230	PRINTS	Ethylene responsive element binding protein signature	33	44	IPR001471	GO:0003700\|GO:0006355
	Bisa09g0068	230	PRINTS	Ethylene responsive element binding protein signature	55	71	IPR001471	GO:0003700\|GO:0006355
	Bisa09g0068	230	PANTHER	AP2 DOMAIN CLASS TRANSCRIPTION FACTOR	26	185	-	-
	Bisa09g0068	230	Pfam	AP2 domain	31	81	IPR001471	GO:0003700\|GO:0006355
	Bisa09g0068	230	SUPERFAMILY	DNA-binding domain	32	91	IPR016177	GO:0003677
	Bisa09g0068	230	MobiDBLite	consensus disorder prediction	129	160	-	-
	Bisa09g0068	230	Gene3D	AP2/ERF domain	32	91	IPR036955	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa09g0068	Bisa-ChrBisa09	722657	723349	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa09g0068	1	230	AP2-EREBP Transcription Factor Family	AT3G20310	60.000	1.15e-60	189

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Bisa09g0068		AP2	1.4e-15	CL0081