LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa09g0048	ATGGGAAACTCCAATTCTGAGCATTCTTCTCCAATCATCTCCTTCAATGGGAAACGACTTGTCGTCGATGAGATGGATTTCTTCGCTGAGAATAAGAAGAATAAGACTGAACATGATGATGATGATCAGATGGTGCACAGAATAGAGCTTCATGTAGATTTTTCAGCATTGGTAGCTGAATTGCATCAGATGAATGCTGAAAATCAACGTTTGAGAGAGATGGTTGATCAGGCTAACGATAACTACAATGCCTTACATATGCAACTTGTCAAGCTGATGCAGAAGCAACAGCATGGTGATGACCATAGGGGAGGCCTAGATGAAAAGAGAAGGAAAGGAAGTATGGTTCCAAGGCAATTTATAGAAATGGGTATTGGTGAGAAAGGAGAGCCAAATTCACAGCAATCTCCAGAGGGAAAATTGGGAGAAAGCAAAAGCATGGTTGACTTGTTGGATCATCAAGATCATTATAATAATAAGATGGATGGTGCAAATAACCAAGCCAGTAGGGACAATGCTATTGATGAGAGGGCAGATAATCATGAAGCAATAATCCCAGGCTGGCTCTCCAATAAAGTCGCTAAATTAAGTTCTTCCAAGAGGGAGGTTGATCAAACCTCAGAAACCTTGTCAATGATCAAGAAAGCCCGTGTTTCTGTTCGAGCAAGATCAGAATCCTCAATGATAACTGATGGATGCCAGTGGAGGAAGTATGGGCAGAAGATGGCAAAAGGAAATCCATGTCCTCGTGCTTATTATCGTTGCACTATGGGTGCCGGCTGCCCAGTACAAAGATGTGCTGAAGATCGAAGTGTGCTTATCACCACGTACGAAGGGCAGCACAACCACCCGCTCCCTCCGACGGCGAAGGCCATGGCATCCACCACGTCGGCGGCCGCCTCGATGCTTCTATCGGGATCGATGCCGAGCAGCGGCGGCGACCACGGGGGCGCCGCTTCCATAATGAACCCCAACATTCTAGAAAGCGCAGTTCAGTGCTCCCAGAACTTCGCGACCCTGTCGGCGTCAGCCCCATTCCCCACCATCACATTGGACCTCACGGCCCAAAGCAACATCTCCTCACAGTCGCAGGCCCAACAAGTGAGCGGGCTGCCTCCCAGCCTCTTCGGGCAGTCCCTGGTGTGCAACAAGACCAGGTTCTCTGGTTTACACATTAATGGGCCCCACCAGGGAATCAACAACACTCACGACGGTACTACCTCCTTCTTTGCCGACACCGTCAATGCTGCCACCGCCGCCATCACTGCTGACCCCAATTTCACGGCGGCTCTGGTGGCGGCGGTGACGTCTATCATTGGGAGTTCCTATCCAAACAGTGGTGATACCAATAATGCGTGA	1359	0.4915	MGNSNSEHSSPIISFNGKRLVVDEMDFFAENKKNKTEHDDDDQMVHRIELHVDFSALVAELHQMNAENQRLREMVDQANDNYNALHMQLVKLMQKQQHGDDHRGGLDEKRRKGSMVPRQFIEMGIGEKGEPNSQQSPEGKLGESKSMVDLLDHQDHYNNKMDGANNQASRDNAIDERADNHEAIIPGWLSNKVAKLSSSKREVDQTSETLSMIKKARVSVRARSESSMITDGCQWRKYGQKMAKGNPCPRAYYRCTMGAGCPVQRCAEDRSVLITTYEGQHNHPLPPTAKAMASTTSAAASMLLSGSMPSSGGDHGGAASIMNPNILESAVQCSQNFATLSASAPFPTITLDLTAQSNISSQSQAQQVSGLPPSLFGQSLVCNKTRFSGLHINGPHQGINNTHDGTTSFFADTVNAATAAITADPNFTAALVAAVTSIIGSSYPNSGDTNNA	452

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa09g0048	452	Gene3D	WRKY domain	214	287	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Bisa09g0048	452	SMART	WRKY_cls	229	285	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Bisa09g0048	452	MobiDBLite	consensus disorder prediction	98	116	-	-
	Bisa09g0048	452	ProSiteProfiles	WRKY domain profile.	224	286	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Bisa09g0048	452	SUPERFAMILY	WRKY DNA-binding domain	222	286	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Bisa09g0048	452	PANTHER	WRKY TRANSCRIPTION FACTOR 36-RELATED	37	447	IPR044810	GO:0003700
	Bisa09g0048	452	Pfam	WRKY DNA -binding domain	231	284	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Bisa09g0048	452	Coils	Coil	54	95	-	-
	Bisa09g0048	452	MobiDBLite	consensus disorder prediction	123	142	-	-
	Bisa09g0048	452	MobiDBLite	consensus disorder prediction	98	117	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa09g0048	Bisa-ChrBisa09	522789	526188	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa09g0048	57	439	WRKY Transcription Factor Family	AT4G04450	44.601	6.31e-92	283

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Bisa09g0048		WRKY	1.8e-18	CL0274