LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa09g0035	ATGGCCAACAACAATAATCATACCGACGCGGAGGATGATGAGCTTGGGTTACTTCCGACAATCGGCGGTGGTCAAGGAGGTGGTGGTCGTGGTGGTGGTGAGGGTGCTGGTGGGGCAGCGGCGGCGGAAGAGGTGGCCCTGAAGAAGGGACCATGGACGGCGGCGGAGGATGCGGTGCTTATAGATTACGTGACCAAGCACGGTGAAGGGAATTGGAATGCGGTGCAGAAGAATGCGGGGTTGGCTCGCTGTGGGAAGAGCTGTCGGTTGAGATGGACGAACCATCTGCGACCCAATCTGAAGAAGGGTGCTTTCTCTCCCGAGGAAGAGAAACGCATTCTTGAGCTTCATGCCCAGTTCGGCAACAAATGGGCTCGAATGGCCACTCTCTTACCTGGGCGAACAGATAATGAAATCAAGAACTACTGGAACACGAGAGTGAAGCGCCGCCAACGGCAAGGCCTGCCTCTTTATTCTAGTGACCTTGATCGGCCAACTACGTCCACCTTGCCCGCCACCACTACTAATACACAACCGACCACCTCCTCCGCGACAAAGTTTGAGTTCTATCATCAGAACCAGCGTCCTCTGTCTTCGCTCCACGCCAGACCTTCCTATTCCACACACACCTCTATCTTAGACCCCAATTCTCTGCCCTCCTCTTCCTCTCCTTGCTTCCCCTTTCACCAACCTAGTCCTCCATTACATATCACCCCACTTCGTTCCAAGCGTTATCGTACCTCCATGACCCTCCTGGATCCGCCTTTAGTGACCTCATTGGTTTCCGATGTTGATGGATTCAACTTTCCAGCTCAATTTAATTCTAGCTTTTCTCATATTTATCAGACCCCATTAGAGTCATCATCTTCAGTTCCAGGGGTTCCACCCCCTTGCTTTCTCTCAACAAAAATGGAGCTCCCTTCAAACCAATTTTCCCAGTTCTTAATAGAGCCAGATATTAAGCTTGTTATGGAAATGAACGACCCTGCTTTGTATACCAGTAACGACTTGCAGGGGGATCTGCTGCTGGAAGCTCAAGCGTCGGTATTTGGCCAGAATTCGAGGAAACGAAGTTACTTGAGTTTGAGTGAAGGAAATGGTATCTTCGATGGAGGCCTAGGCTTGGACGATTTGCCTCTTAGCTCTGTTTACTGGTCTTCTTTAGGATTGAAACCAAAGTCAGAACCACAAGACCTTGGCAAATCCATGAATGACCTTTCCACACTGATTTCTGGAATGCCTTCCACAATTCAGGATCCGTATTGGCATAATGACAGTACTGCACAAGTCTCCAATGTCCAGTCTTCTGGTGTCACAATGCCAGATGATAATTTTGGACTTGACTGCAAGCCTGTTGCTTCATTGCTTCCTATCACCACCACAACAAGCTCTAGCGAAAACCCTGGCATTTACTCTTGGGACACCTTACCTGGTCTCTGCTAA	1443	0.4969	MANNNNHTDAEDDELGLLPTIGGGQGGGGRGGGEGAGGAAAAEEVALKKGPWTAAEDAVLIDYVTKHGEGNWNAVQKNAGLARCGKSCRLRWTNHLRPNLKKGAFSPEEEKRILELHAQFGNKWARMATLLPGRTDNEIKNYWNTRVKRRQRQGLPLYSSDLDRPTTSTLPATTTNTQPTTSSATKFEFYHQNQRPLSSLHARPSYSTHTSILDPNSLPSSSSPCFPFHQPSPPLHITPLRSKRYRTSMTLLDPPLVTSLVSDVDGFNFPAQFNSSFSHIYQTPLESSSSVPGVPPPCFLSTKMELPSNQFSQFLIEPDIKLVMEMNDPALYTSNDLQGDLLLEAQASVFGQNSRKRSYLSLSEGNGIFDGGLGLDDLPLSSVYWSSLGLKPKSEPQDLGKSMNDLSTLISGMPSTIQDPYWHNDSTAQVSNVQSSGVTMPDDNFGLDCKPVASLLPITTTTSSSENPGIYSWDTLPGLC	480

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa09g0035	480	MobiDBLite	consensus disorder prediction	1	37	-	-
	Bisa09g0035	480	ProSiteProfiles	Myb-like domain profile.	44	96	IPR001005	-
	Bisa09g0035	480	Pfam	Myb-like DNA-binding domain	49	96	IPR001005	-
	Bisa09g0035	480	Pfam	Myb-like DNA-binding domain	102	145	IPR001005	-
	Bisa09g0035	480	SUPERFAMILY	Homeodomain-like	47	143	IPR009057	-
	Bisa09g0035	480	Gene3D	-	104	173	-	-
	Bisa09g0035	480	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	44	96	IPR017930	-
	Bisa09g0035	480	CDD	SANT	51	96	IPR001005	-
	Bisa09g0035	480	Gene3D	-	48	101	-	-
	Bisa09g0035	480	CDD	SANT	104	145	IPR001005	-
	Bisa09g0035	480	PANTHER	TRANSCRIPTION FACTOR MYB33-RELATED	29	357	-	-
	Bisa09g0035	480	FunFam	MYB-related transcription factor	48	101	-	-
	Bisa09g0035	480	SMART	sant	48	98	IPR001005	-
	Bisa09g0035	480	SMART	sant	101	149	IPR001005	-
	Bisa09g0035	480	MobiDBLite	consensus disorder prediction	154	182	-	-
	Bisa09g0035	480	FunFam	Transcription factor GAMYB	104	150	-	-
	Bisa09g0035	480	MobiDBLite	consensus disorder prediction	160	182	-	-
	Bisa09g0035	480	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	97	151	IPR017930	-
	Bisa09g0035	480	ProSiteProfiles	Myb-like domain profile.	97	147	IPR001005	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa09g0035	Bisa-ChrBisa09	413090	415344	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa09g0035	46	162	MYB Transcription Factor Family	AT2G32460	77.778	1.02e-63	212

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Bisa09g0035		Myb_DNA-binding	3.6e-13	CL0123