Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa09g0003 ATGGCTCCCAGTTTCGTATTCGAACCACCCAGCGACGAAGAGGTCGAATATACTGAAGCTGAAGACGAAGAACAGGAGCAAAGCGAAGAAGAGGAAGAAGGAGAGCAAAGTGAAGGAGAAGAAGGAGGAGGAGGAAAAGCACGAGTTTCGAATAAGAAATCTCAATCTCCATGGGACTTCGCCAAGTACTCTGAATCCGTCGCCGAGGAACATGCGCGCCGAAGCACGACCTCAGTCGATCAGAAAATTGCCAAAGCCCTTAAAGAACGCTCCACTCAACTCAGAAAGCCCACCGAAGATGACAGCGAGAGCTCGGAGTCCGAACCCGACAAACAAGAAGATTATAGACCAGAAGACGAAGAAGACGAAGATGGCAATGAGGGCGATAGCAAGTCTTTCTTCGCTCCATCTGAAGGAGCTTCGTTCCATGCTGATTCATTCATGGAGCTTAACTTGTCGCGCCCTTTGCTCCGGGCTTGTGAGGCCTTGGGATACGTTACGCCAACACCAATTCAGGCAGCGTGTATCCCATTGGCATTGACTGGCCGTGATATATGTGGAAGTGCCATTACCGGCTCTGGAAAGACAGCTGCATTTGCACTACCTACTCTGGAGAGGCTTTTGTTCCGTCCAAAACGTATGCACGCAATAAGAGTCCTTGTTCTTACTCCAACCAGAGAATTGGCGGTCCAAGTTCACAGTATGATAGAGAAGCTTGCTCAGTTTACTGATATAAGGTGTTGCTTGGTTGTTGGGGGTCTGTCAACAAAGGTGCAAGAGGCAGCCTTGAGATCAATGCCGGATATTGTTGTGGCTACTCCAGGACGGATGATAGACCATTTACGCAATTCTATGTCAGTGGATTTAGATGATCTTGCTGTTCTAATCCTTGATGAGGCAGATCGTCTATTAGAGCTTGGATTTAGTGCTGAAATTCATGAACTCGTTCGCCTGTGTCCCAAAAAAAGGCAGACCATGCTATTTTCAGCGACCATGACTGAGGAGGTTGATGAACTTATAAAACTTTCCTTAACAAAACCCTTGCGTCTGTCTGCTGATCCATCTGCAAAACGGCCGGCAACTTTGACTGAGGAGGTGGTTAGAATAAGAAGAATGCGCGAAATAAATCAGGAAGCAGTTCTACTTGCATTGTGCTCCAAAACTTTTACTTCTAAAGTGATCATATTCAGTGGAACAAAGCAAGCTGCACATAGGTTGAAGCTTATATTTGGATTAGCTGGTTTGAAAGCTGCTGAGCTTCATGGAAATCTTACCCAGGCTCAGCGCCTTGAAGCTTTGGAGCAATTCAGGAAGCAGCAAGTTGATTTTTTGGTTGCAACTGATGTGGCTGCTCGAGGCCTTGATATTGTTGGTGTTCAAACAGTTATCAACTTTGCATGTCCACGTGACCTTACCAGCTATGTTCATCGAGTAGGTCGTACTGCAAGGGCTGGCAGAGAAGGATATGCTGTCACGTTTGTGACTGATAATGACCGTTCGCTTTTAAAAGCTATTGCAAAAAGGGTTGGTTCAAAGCTGAAGAGCCGTATTGTTGCTGAGCAATCTGTAATTAAGTGGTCTCATATAATTGAGCAAATGGAGGATGAAATTGCTGCAGTATTTCAAGAAGAGAGGGAAGAAAGAGCCCTGAGGAAAGCTGAGATGGAAGCAACTAAGGCAGAAAACATGATTGAGCACAAGGAAGAGATTTATTCCCGCCCCAAAAGAACCTGGTTTATGACGGAGAAGGAAAAGAAGCTTGCTGCAAAAGCAGCAAAAACATCTAATGACAAGGAAAAGAGTTCACGGAATGAGGTAATTAGTGCCCAACAAGCTGAAGACCTAAGAATGAAGGAAAAGAGGAAGCGGGAGCGAGAGAAAAATTTGCCCAGGAAAAAGCGTAGAAAATTGGAAGCAGCTAGAGAGATGTTAGAAGAGGAAGGCCGTGTGGAGAAACCAAAAGCTAATTGGCAAAATGAGAAAGAAAAGGCTGGAATGTCACTGGTTGATCTAGCATACCGTCGGGCAAAAGCAGGGAAGGCTGTGAAGAAGGCACTTGATGCTGGCAAGATTTTGAAGAAGGGTAAAAGGAAATCCAATCATTCTTCCCAAAAGACTACTTCAAGGACTGAAGAAATGCGGGAACTTTTTCAAAGTGACATAAGTGATAAAAAGCAAAGAAGAGGTGTTAGAACAGGAAAGAAGTCCAAGAGTTCGTTCAAAAGCAAGGCAAGGTACAAGCGCAGGTAG 2250 0.4516 MAPSFVFEPPSDEEVEYTEAEDEEQEQSEEEEEGEQSEGEEGGGGKARVSNKKSQSPWDFAKYSESVAEEHARRSTTSVDQKIAKALKERSTQLRKPTEDDSESSESEPDKQEDYRPEDEEDEDGNEGDSKSFFAPSEGASFHADSFMELNLSRPLLRACEALGYVTPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLFRPKRMHAIRVLVLTPTRELAVQVHSMIEKLAQFTDIRCCLVVGGLSTKVQEAALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKKRQTMLFSATMTEEVDELIKLSLTKPLRLSADPSAKRPATLTEEVVRIRRMREINQEAVLLALCSKTFTSKVIIFSGTKQAAHRLKLIFGLAGLKAAELHGNLTQAQRLEALEQFRKQQVDFLVATDVAARGLDIVGVQTVINFACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRVGSKLKSRIVAEQSVIKWSHIIEQMEDEIAAVFQEEREERALRKAEMEATKAENMIEHKEEIYSRPKRTWFMTEKEKKLAAKAAKTSNDKEKSSRNEVISAQQAEDLRMKEKRKREREKNLPRKKRRKLEAAREMLEEEGRVEKPKANWQNEKEKAGMSLVDLAYRRAKAGKAVKKALDAGKILKKGKRKSNHSSQKTTSRTEEMRELFQSDISDKKQRRGVRTGKKSKSSFKSKARYKRR 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa09g0003 749 MobiDBLite consensus disorder prediction 704 727 - -
Bisa09g0003 749 Pfam Helicase conserved C-terminal domain 381 485 IPR001650 -
Bisa09g0003 749 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 217 505 IPR027417 -
Bisa09g0003 749 CDD DEADc_DDX27 156 351 - -
Bisa09g0003 749 MobiDBLite consensus disorder prediction 589 604 - -
Bisa09g0003 749 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 145 173 IPR014014 GO:0003724
Bisa09g0003 749 Coils Coil 17 40 - -
Bisa09g0003 749 Coils Coil 609 629 - -
Bisa09g0003 749 Gene3D - 87 352 IPR027417 -
Bisa09g0003 749 MobiDBLite consensus disorder prediction 688 749 - -
Bisa09g0003 749 SMART ultradead3 164 365 IPR014001 -
Bisa09g0003 749 Gene3D - 358 535 IPR027417 -
Bisa09g0003 749 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 296 304 IPR000629 -
Bisa09g0003 749 MobiDBLite consensus disorder prediction 728 749 - -
Bisa09g0003 749 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 176 350 IPR014001 -
Bisa09g0003 749 MobiDBLite consensus disorder prediction 642 659 - -
Bisa09g0003 749 MobiDBLite consensus disorder prediction 12 38 - -
Bisa09g0003 749 Pfam DEAD/DEAH box helicase 169 339 IPR011545 GO:0003676|GO:0005524
Bisa09g0003 749 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 380 524 IPR001650 -
Bisa09g0003 749 MobiDBLite consensus disorder prediction 64 102 - -
Bisa09g0003 749 MobiDBLite consensus disorder prediction 103 127 - -
Bisa09g0003 749 MobiDBLite consensus disorder prediction 1 135 - -
Bisa09g0003 749 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 105 705 - -
Bisa09g0003 749 SMART helicmild6 400 485 IPR001650 -
Bisa09g0003 749 Coils Coil 530 570 - -
Bisa09g0003 749 CDD SF2_C_DEAD 362 494 - -
Bisa09g0003 749 MobiDBLite consensus disorder prediction 642 661 - -
Bisa09g0003 749 MobiDBLite consensus disorder prediction 589 637 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa09g0003 Bisa-ChrBisa09 50511 63298 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa09g0003 101 502 Eukaryotic Initiation Factors Gene Family AT3G13920 32.759 5.55e-51 182