Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa08g2741 ATGGACTGGAATGCAAAATCTCCCTTGCAGTGGGACTGGGAACACCTCTTCCCTTTTAACGCAAAAGCAACTGAAAATCCATCAGGCTGGAGAGGTGAAGCAGATCGAGAAATAAATGTTGGGTTGCCCTATCCATCAGGCGGTAGTGGTTGTTCTGGGTCTGAGCCAGTACATGCTTCTTCATCAAGGAGCTCAAAATCAGCTTCCATCAATTCCTCATCAAATGGGTATAGCAAAACATCAGTGTTTACTTTTGACGGCTCCCAAGAAGATTCTAGTGGTAAGAAAGAAATGTCAAAAGAGGAGCCTGTTAAAACGTCTCCCACACTTGAGCATTCTTCTGTCTCTGGTGAACCATTGCTCGGTCTGAAGCTTGGTAAACGGCTGTACTTTGAAGATGTTTGCTCAGGAAGTGATACCAAGAACCCATCTCTCTCTGGGATTCCCATGCCCTCTTTGAGTACTGGAAAAAAATGCAAGTCCCATGGTCAGAGCCCAGAACCTTCACGCTGCCAGGTTGAAGGCTGTAACCTTGACCTCTCGTCAGCTAAAGATTATCATCGCAAGCATAGAGTTTGTGAAAGTCATTCCAAATCCCCAAACGTGGTTGTTGGTGGTTTGGAGCGTCGATTTTGCCAGCAATGTAGCAGGTTCCATGGTCTGTCAGAGTTTGATGACAAAAAAAGAAGTTGCCGGCGTCGTCTTTCTGATCACAATGCTAGGCGTCGCAAGCCTCATCCTGAAGCTGTCCAGTTGAACACATCATTTTTGCCCTCATTACCACGATATGATGGGAGGCAACAGATGATCCCATTTTCTTATTCAAGGGCTGCGACTAGCTTAACCTGGCAAGATGCATACAGCACCAAGATCCCCCAAACAAAAGAATTTCTCGTGGAGCCTGCAAAAGCAGGAGGTACCAATGGGCAGGTGCATCGGCCCTTCAATGAGATGCCAAATACCTTCACTATGTCTTTTGAAGATTCCAGTGGGCTTTGCATATCCAAAGGCATACCAGCCAAGACTATCCGTTCAGGCATAGAAGATTCCGTTGTCCCATCTGATCTGAATGCTACACAAGATTTTCAACGTGCTCTCTCTCTTCTGTCAACCAATTCTTTGAGTACACATGAGACGAAGTCTACTACTACTCTCGAGCATTCCAATCACACAGCTCATACTGTTACGGCGCAGCCTATAACGCACTCAATGATTCATCGTTTGCCTCGTACTTCATCAGAATATTGGGAGACTTATCAACAGCCAGTTGACTCACGTATGGGTGTCTTATATTCAGATTGTGATGACGGCAGTCACTTTCCAGATTTCCAGCTGGTTAAAGCATCCTACGAGTCTGGCTTTCCTTGCAACCAGTTGGATTAA 1383 0.4577 MDWNAKSPLQWDWEHLFPFNAKATENPSGWRGEADREINVGLPYPSGGSGCSGSEPVHASSSRSSKSASINSSSNGYSKTSVFTFDGSQEDSSGKKEMSKEEPVKTSPTLEHSSVSGEPLLGLKLGKRLYFEDVCSGSDTKNPSLSGIPMPSLSTGKKCKSHGQSPEPSRCQVEGCNLDLSSAKDYHRKHRVCESHSKSPNVVVGGLERRFCQQCSRFHGLSEFDDKKRSCRRRLSDHNARRRKPHPEAVQLNTSFLPSLPRYDGRQQMIPFSYSRAATSLTWQDAYSTKIPQTKEFLVEPAKAGGTNGQVHRPFNEMPNTFTMSFEDSSGLCISKGIPAKTIRSGIEDSVVPSDLNATQDFQRALSLLSTNSLSTHETKSTTTLEHSNHTAHTVTAQPITHSMIHRLPRTSSEYWETYQQPVDSRMGVLYSDCDDGSHFPDFQLVKASYESGFPCNQLD 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa08g2741 460 ProSiteProfiles Zinc finger SBP-type profile. 168 245 IPR004333 GO:0003677
Bisa08g2741 460 Pfam SBP domain 171 244 IPR004333 GO:0003677
Bisa08g2741 460 SUPERFAMILY SBT domain 169 250 IPR036893 GO:0003677|GO:0005634
Bisa08g2741 460 FunFam Squamosa promoter-binding-like protein 14 162 232 - -
Bisa08g2741 460 Gene3D - 161 232 IPR036893 GO:0003677|GO:0005634
Bisa08g2741 460 MobiDBLite consensus disorder prediction 90 107 - -
Bisa08g2741 460 MobiDBLite consensus disorder prediction 53 89 - -
Bisa08g2741 460 MobiDBLite consensus disorder prediction 24 116 - -
Bisa08g2741 460 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 58 323 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa08g2741 Bisa-ChrBisa08 62938789 62941513 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa08g2741 1 417 SBP-box Gene Family AT5G43270 39.080 1.59e-64 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Bisa08g2741 SBP 8.4e-32 No_clan