Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa08g2718 ATGGGATCCAATTGGGGAGAAGAAGCTGCACAAGTCGCCATGGTGAAGTACTCCAGAGAACCCGACAATCCTACCAAGTCCTGCAAGGCCAGAGGCTCCGACCTTAGAGTCCATTTCAAGAACACTAGGGAGACAGCCTTTGCTATCAGAAAGTTGCCCTTGGCAAAGGCAAAGAGGTACCTGGAGGATGTGCTGGCCCACAAACAGGCCATTCCCTTCCGACGATTCTGTGGTGGTGTTGGGAGGACTGCCCAGGCAAAGAACAGACATTCTAATGGACAAGGACGCTGGCCTGTCAAATCAGCGAAATTCATTCTTGATTTACTTAAGAATGCTGAAAGTAATGCTGAAGTGAAAGGCTTGGATGTCGATGCTCTCTACATTTCTCACATCCAGGTTAATCAAGCTCAGAAGCAAAGACGCCGGACCTACCGAGCTCATGGAAGAATCAACCCCTACATGTCATCTCCATGCCATATAGAGTTGATATTATCTGAAAAGGAGGAGCCTGTGAAGAAGGAGCCGGAGTCCCAGTTGGCAACAAGCAAGAAGTCCCAATCATCATAA 567 0.485 MGSNWGEEAAQVAMVKYSREPDNPTKSCKARGSDLRVHFKNTRETAFAIRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPESQLATSKKSQSS 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa08g2718 188 FunFam 60S ribosomal protein L17 14 188 - -
Bisa08g2718 188 Pfam Ribosomal protein L22p/L17e 30 165 IPR001063 GO:0003735|GO:0005840|GO:0006412
Bisa08g2718 188 CDD Ribosomal_L22 28 164 IPR001063 GO:0003735|GO:0005840|GO:0006412
Bisa08g2718 188 NCBIfam 50S ribosomal protein L22 17 167 IPR005721 GO:0003735|GO:0006412|GO:0015934
Bisa08g2718 188 Hamap 50S ribosomal protein L22 [rplV]. 13 167 IPR005721 GO:0003735|GO:0006412|GO:0015934
Bisa08g2718 188 SUPERFAMILY Ribosomal protein L22 14 167 IPR036394 GO:0003735|GO:0005840|GO:0006412
Bisa08g2718 188 Gene3D Ribosomal protein L22/L17 14 188 IPR036394 GO:0003735|GO:0005840|GO:0006412
Bisa08g2718 188 PANTHER 60S RIBOSOMAL PROTEIN L17 14 187 IPR005721 GO:0003735|GO:0006412|GO:0015934
Bisa08g2718 188 MobiDBLite consensus disorder prediction 166 188 - -
Bisa08g2718 188 ProSitePatterns Ribosomal protein L22 signature. 140 164 IPR018260 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa08g2718 Bisa-ChrBisa08 62581972 62583946 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa08g2718 14 188 Cytoplasmic Ribosomal Protein Gene Family AT1G27400 89.205 2.55e-116 326