Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa08g2664 ATGGCAGAAACCGGTATTGTCCGGTTTCCGGGAAGCTTAGACCCGCGAGCGGAAGAGTTCACTCCGAGAAATCCTACACTATTCAGGCCAACCCAACTGTACTACCCCTACTCCACCACCGCAGGGCTTCAGCTTCAGCCTCAACCTCTTCCCTTCTGTGACGCCGTCGGTGTTCCGTATTCCCAGTTCTCCGTCTCCACCCCCGCGGCGTACGTTTCCCCGCTGGCGGCGGCTGTGGGGCCACCGGCGGCGCCATGTTCGACGACGCCTACTCGGTCGTTGCTACTGAGTTCCGTGCCGGCGGAGCTGGTGAGTGAGTCGACGTTGAGGAGGGAATTGGAGGTGTTCGGCGATGTGAGAGGGGTGCAGATGGAGAGGGTGCGAGAAGGAATAGTGACCGTGCATTTCTATGACTTGAGACATGCAGAGGCGGCGTTGATGGCGATTCGGAAGCAGCACATGCAACAGCAGACCCGGCTTCGCAATTACTACGCTTCGTTGTTGAAGTCACGCAATTCAGTGCTGGAAGCAGGTTGTTACGCCCTCGCCGCAGCCCCACTCCCACCGCCGGCGCGTGGGCTCATAGCCGGCCGCGCCGTGTGGGCCCAGTACGTCGTCCCCGCGTATAACGCCGTTCCCGACGCCCAAAACCAAGGGACCATCGTGATTTTCAACTTGGATTCGGAGGTGTCCCCGGAGACTCTCCGACAGACCTTCGAGGCATTTGGTCCTGTGAAGGAATTGAGAGATACGCCCTCCAAAAAGAATCAGAGGTTCGTCGAGTTCTTCGACATCAGAGATGCCGCCAAGGCCTTGAAAGAGATGAACGGCAAGCAAATTCACGGTAAGCCTGTTGTTATTGAGTTCAGTCGTCCTGGAGGCCATGGCAGGAAGTTCTTCAACCCCTCTGCAATCTCCAAACACAATGTTGTTCACTCGGTGCCGCCTCTAAATTTCCCACCTCCATCCCCAGCATTACCTCCTAATTCCCCACCTCCATTGCCTCGCAAAAATACACGTCGTTTTGCTCCTGTCGCTCCTCCTCGCTCTCATCTTCTCAAGAAATCATCTGTCAACAAGGGAATCAGTAACAATAACGGTAGTACCAATCCGGAAGGTGTTAGTAAGAGTGATAACTCTAATCCCGTGTCCGTGGAAACATCAGTGGGTTCGACGAATTTAAGTGAGGAAGCTGGGAATAATAATGGGGTTGAAGAGAAGCTCGGCATGAAGAACTACAGCAGCGAGACGAAGCAGCAAGCAGCAGCTAGAAGTAGGAATTGGAAGGGAAAGCAAGGGAGGAAGCATGAAACTCGGTTTCTAATTAAAGAAGATGCTATTGTAGAGTCGAGTCTCAAAGATTCCAGAACCACTGTCATGATCAAGAACATACCCAACAAGTACAGTCAGAAGCTACTATTGAACATGCTGGACAACCACTGCATACACTGCAACGAGCAGATTAGGGAGGGCGACGACCAGCCTTTGTCCTCATACGACTTCGTTTACCTCCCCATTGATTTCAACAACAAATGCAATGTGGGATATGGGTTCGTGAACATGACATCTCCGGAGGCAACGCTGAGGCTGTACAAGGCATTCCATCTTCAACATTGGGAGGTGTTCAACTCCAGAAAAATATGCGAAGTCACCTACGCAAGAGTTCAGGGTTTGGAGGCGTTGAAGGAGCACTTCAAGAACTCCAAGTTTCCGTGCGAGATGGAGCACTACCTGCCGGTGGTGTTCTCTCCGCCGCGAGACGGAAGGCAGCTGACGGAGCCGCTTCCGATCGTCGGTCAGAAGCAGCAAGCAGTCGTCCTTGGTGGGGACAACAACTCTAAGGCTGCTACTGACGACATGCACAGCAGCAGCAGCAGCAGCCAAAACGGCGCCGTAGAGGGTGACGATGACAGAAGAAGTGGCGGCGAAGTGGAGGAGGAAGAGGATGGAAAGTAG 1956 0.5358 MAETGIVRFPGSLDPRAEEFTPRNPTLFRPTQLYYPYSTTAGLQLQPQPLPFCDAVGVPYSQFSVSTPAAYVSPLAAAVGPPAAPCSTTPTRSLLLSSVPAELVSESTLRRELEVFGDVRGVQMERVREGIVTVHFYDLRHAEAALMAIRKQHMQQQTRLRNYYASLLKSRNSVLEAGCYALAAAPLPPPARGLIAGRAVWAQYVVPAYNAVPDAQNQGTIVIFNLDSEVSPETLRQTFEAFGPVKELRDTPSKKNQRFVEFFDIRDAAKALKEMNGKQIHGKPVVIEFSRPGGHGRKFFNPSAISKHNVVHSVPPLNFPPPSPALPPNSPPPLPRKNTRRFAPVAPPRSHLLKKSSVNKGISNNNGSTNPEGVSKSDNSNPVSVETSVGSTNLSEEAGNNNGVEEKLGMKNYSSETKQQAAARSRNWKGKQGRKHETRFLIKEDAIVESSLKDSRTTVMIKNIPNKYSQKLLLNMLDNHCIHCNEQIREGDDQPLSSYDFVYLPIDFNNKCNVGYGFVNMTSPEATLRLYKAFHLQHWEVFNSRKICEVTYARVQGLEALKEHFKNSKFPCEMEHYLPVVFSPPRDGRQLTEPLPIVGQKQQAVVLGGDNNSKAATDDMHSSSSSSQNGAVEGDDDRRSGGEVEEEEDGK 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa08g2664 651 SUPERFAMILY RNA-binding domain, RBD 219 535 IPR035979 GO:0003676
Bisa08g2664 651 MobiDBLite consensus disorder prediction 356 400 - -
Bisa08g2664 651 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 221 285 IPR000504 GO:0003723
Bisa08g2664 651 FunFam Terminal EAR1-like 1 404 562 - -
Bisa08g2664 651 MobiDBLite consensus disorder prediction 600 651 - -
Bisa08g2664 651 Gene3D - 212 298 IPR012677 -
Bisa08g2664 651 CDD RRM3_EAR1_like 456 557 IPR034458 -
Bisa08g2664 651 SMART rrm1_1 93 161 IPR000504 GO:0003723
Bisa08g2664 651 SMART rrm1_1 220 288 IPR000504 GO:0003723
Bisa08g2664 651 MobiDBLite consensus disorder prediction 321 338 - -
Bisa08g2664 651 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 92 167 IPR000504 GO:0003723
Bisa08g2664 651 SUPERFAMILY RNA-binding domain, RBD 82 154 IPR035979 GO:0003676
Bisa08g2664 651 PANTHER RNA RECOGNITION MOTIF-CONTAINING 452 588 - -
Bisa08g2664 651 Pfam RNA recognition motif 2 456 566 IPR007201 -
Bisa08g2664 651 MobiDBLite consensus disorder prediction 605 631 - -
Bisa08g2664 651 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 219 292 IPR000504 GO:0003723
Bisa08g2664 651 MobiDBLite consensus disorder prediction 321 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa08g2664 Bisa-ChrBisa08 61810570 61813275 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa08g2664 221 291 Eukaryotic Initiation Factors Gene Family AT2G23350 36.000 2.25e-07 52.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa08g2664 08 61810570 61813275 Bisa08g2664 08 61810570 61813275 ECH