Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa08g2636 ATGGGTTGCAGAAGACATTGCAGCCCAGCACCCTCTCCTCACCAGTCACCTTCTCCTCATCAGTCGCCGCGGGTGTCGCATCCGAATGCGGCGACGGTGCCGTTCATATCGTCGATTAATTATGGCGATGACATAGATCACATTTCTCTACTTCGTGTCGCTATTATTGCCATAGCTTCCACAGCTGGCGTGATGATCTTTCTTTTCGTCATATTTAAAATTCTCGGTAACTACTATTCATGGAGTTATTACAATAGGGAAAGAAACGCCCCGATCTTGTTCGATATCCATGGAGATTCTCCTTCTTCCGATGATGAGGGAGCAGTGATTAACCATCCGATATGGTTCATCAACACCGTTGGTCTCCAGCAATCGATTATAGATTCAATCACGGTCTGCAAATACAGAAAAGACGAGGGATTAGTGGAAGTAACAGAGTGTTCTGTGTGCCTAGCTGAGTTTCAAGAAGACGAGAGTCTTCGACTTTTGCCCAAGTGTAGCCACGCTTTTCACGTTCCTTGCATTGATGCTTGGTTGAGATCGCATAAGAATTGCCCCTTGTGTCGTGCCCCTATAGTTCGTGAAACTTCTGGAAGAGAGTCAAGCGTAGTAACTGTGCCTGATTTCAACGTTTCCGGTGAGATCCATGGGGAGAATTTTGATGGTGGGCTAGGAGACCATCCCGTAGGAGAAGGTGAGAGTAGTGAAGTGAGGGTTGGAGATGATGATTCCGGGATTATGCCTTCTGAAGATGGAGAAGGCAGTGAAGTTTCAGAGAAAAATTTGGGTAATTCTGACAAGATTAATTACCATAGTGCGCGAGTGAGCAGTAGCGAGAATGCTGCCATTGCTACTGAGTGGATTCATTTGCAGAAGAGTCTGTTTCCCAGACATTACAGAGGCATAGCTCAGACTCTTCGTGTATCAAGTAGTAGATGTGAGTAA 945 0.4593 MGCRRHCSPAPSPHQSPSPHQSPRVSHPNAATVPFISSINYGDDIDHISLLRVAIIAIASTAGVMIFLFVIFKILGNYYSWSYYNRERNAPILFDIHGDSPSSDDEGAVINHPIWFINTVGLQQSIIDSITVCKYRKDEGLVEVTECSVCLAEFQEDESLRLLPKCSHAFHVPCIDAWLRSHKNCPLCRAPIVRETSGRESSVVTVPDFNVSGEIHGENFDGGLGDHPVGEGESSEVRVGDDDSGIMPSEDGEGSEVSEKNLGNSDKINYHSARVSSSENAAIATEWIHLQKSLFPRHYRGIAQTLRVSSSRCE 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa08g2636 314 FunFam RING-H2 finger protein ATL54 122 195 - -
Bisa08g2636 314 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 122 197 IPR013083 -
Bisa08g2636 314 SMART ring_2 147 188 IPR001841 -
Bisa08g2636 314 SUPERFAMILY RING/U-box 127 198 - -
Bisa08g2636 314 MobiDBLite consensus disorder prediction 1 27 - -
Bisa08g2636 314 MobiDBLite consensus disorder prediction 220 265 - -
Bisa08g2636 314 Pfam Ring finger domain 146 189 IPR001841 -
Bisa08g2636 314 ProSiteProfiles Zinc finger RING-type profile. 147 189 IPR001841 -
Bisa08g2636 314 MobiDBLite consensus disorder prediction 231 245 - -
Bisa08g2636 314 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 48 196 IPR044675 -
Bisa08g2636 314 SMART FANCL_C_2 143 196 - -
Bisa08g2636 314 CDD RING-H2_EL5-like 146 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa08g2636 Bisa-ChrBisa08 61363688 61364886 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa08g2636 49 236 C3H Transcription Factor Family AT1G72220 44.503 5.92e-42 148