Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa08g2635 ATGAAGAAAACCTACCATTACATTCCCCCTGGTTTCCGGCGAAACCCGGAATTCCATGGTAAAGATTACAATCCCAGCAAATTCCGTCCCGGTTACTGTTCAAATCATCACCGGAAATCAGAATTCCGCCCTACTCAACGCCTCGACTGTCCGCCGGGGAGCTTTTCCCCCACCCAGAAACCTAATTTCGTCGTCCGGCTCCGCTCCGGCCGCCGCAGTTTCAACAAGACAGATGTTGAGTCATTGATTGCAGAATGCAAGTGTAAGCCCGAGAGTTTCAGTGTTTTCCCTGGTGATCATGTTGCCGCCGGCCTCAATTTTTGTCAGTGGGTCGACGCGCTTGAGGCCTTTCTTTGCTTCTGGGAATTTCGGCTCAATGAAGTTCACGACTTTACTCCGGAGATCATATCGCACGTCCGCGTGCCTTCCGACAAGGACGAGCTACGTGGCCGGCTTCGGGCCCTTTTCGCGAGTCATGTGAAGGGGTTGCTAGAAGGCAAGGAAGTCAAGAGATGGCGTGAGGAAAGTGAGCGTATCTCGAAGGAAATTGCGCGTTCAACATACTTGCTTAATAGGCCGATATCAATCCCCATGAATTATGAGCTCCGTGAAAAGAAGAAAGGCCTTGATGCAGAGAAAAGGCTGATTGAAAGGAGAATAAAGGAGTTTCGGTCTGGAATGGAGTGCATATTGCGGTATCTCGAGGACAGTAAGGCGGAGGAGGATGGTTGCGCTGTTTTCCGAAAATTTAAGTTTGATGAAGCCTTGGATTGGAAGCGTATAGATAGTCTGATAATGCGGGAGCGTCGCAGACTTGAGGAGGGTTTGCCCATATATGCTTACCGGAGCGATATTCTTCAAGAGATTCATTCTCAACAGACAATGGTATTAATTGCAGAGACTGGTTCAGGGAAGAGTACGCAGCTGGTGCAGTTTCTTGCTGATTCAGGCATTGGTGCCAATGAATCCATTATATGTACTCAACCTCGCAAGATTGCTGCCAGATCATTGGCACAAAGGGTCCAGGAGGAGAGTAGCGGATGTTATGAAGACAATTCAATAAAGTGTTATTCAACATTTTCATCCTCGCATGAGTTTAATTCTAAAATATTATTCATGACAGACAACTGTTTGTTGCAGCACTATATGAGTGATAATAATTTGTCTGGGATCTCATGCCTCATAATTGACGAGGCTCATGAAAGGAGCCTAAATACAGATCTACTGCTGGCATTGATCAAGAGCTTGCTCTGTAGGAGGGTTGAAATGCGGCTCATCATCATGTCTGCTACAGCTAATGCGAAGCAGCTATCTCATTACTTCTATGGTTGTGGAATATTTCATGTGTTTGGGAGAAACTTTCCCGTTGATGTGAGATATGTTCCTTCTGGCCATGCAGAACACTCTGGTTCTGCCATCCTTGCTTCATATGTTTCAGACGTTGTGAGAATGGCAACTGAAGTTCACAAAACAGAGAAAGAGGGAACCATTCTTGCCTTTTTGACCTCAAAGGCTGAAGTAGAATGGGCTTGTGAACAGTTTCAAGCTTCCTCTGCTGTTGCTTTCCCTTTACATGGCAAACTATTGCCTGAGGAGCAATTTCGAGTTTTCCAGAACTACCCTGGAAAAAGAAAAGTGATATTTGCAACAAATCTTGCAGAGACATCACTTACAATCCCTGGTGTCAAGTATGTCATAGACTCTGGGTTTGTTAAAGATAGTCAGTATGAGCCTGGCAGTGGCATGAATGTACTTAGAGTTTGCTGGATCAGCCAGAGCTCTGCTAATCAAAGGGCTGGTCGTGCTGGGAGGACCGAGCCTGGCAAGTGCTATAGACTCTACTTAGAATCTGATTATAATTCTATGCCACCAAATCAAGAACCCGAGATTCGGCGGGTTCATCTTGGTGTAGCAGTTTTGAGGATACTTGCCTTGGGAGTGAAGAATGTGGAGGATTTTGACTTTGTTGATGCTCCAAATCCTAGTTCTATTGAGATGGCAATCAGGAATTTAATTCAATTAGGAGCAATTAGATTGAACAATAATACTTATGAATTAACTGGTGAAGGTTGGTACTTGGTGAAGATGGGTGTTGAGCCTAGGCTCGGTAAACTTATTCTTGGCTGTTTCCGCTATGGTTTGGGCAAAGAAGGCCTTGCCCTTGCTGCAGTGATGGCCAATGCCAGTAGCATATTTTGCAGAGTAGGAAATGAAGATGATAAACAAAGATCTGATCGTCTTAAGGTGCAATTTTGCCATTGCAATGGTGACCTCTTTACTCTTTTGTCTGTGTACAAGGAGTGGGATGCTTTGCCTCAACAGTGTAGAAACAAATGGTGCTGGGAAAACAGTATCAATGCCAAGTCCATGAGGAGATGCCAAGATGCGATTATGGATCTGGAATCCTGCCTTGAGCGTGAACTTGCTGTTGTTATTCCAAGCTACTGGCGTTGGGACCCTCACAAGTCTTCTGATTGTGATAAGTCGCTGAAAAGGGTTATATTGTCTTCACTTGCTGAGAATGTAGCTATGTACTCTGGTTGCCATCAACTTGGTTATGAAGTGGCATTAACTGGGCAACTTGTTCAACTACACCCATCTTGTTCATTACTAGTATTTGCTGACAAACCTAGCTGGGTTGTTTTTGGTGAGCTCCTTTCAGTTTCCAGTCAATATTTGGTCTGTGTAAGTGCTTTTGACTTTGAATCATTGAGCACGCTTTACCCTCCTCCCTTATTCGATGTATTCAAGATGGAAAGAAAGAAGTTGCAAATGAAGGTGTTGACTGGCTTGGGCTGTACTCTGCTCAAGAGAATTTGTGGGAAAGCCAACTGTAATCTGCTTGGTCTTGTATCACGTGTACGAACGGCTTGCATGGATGAACGTATCTCAATTGAAGTCAATGTTGACCAGAATGATATTCGGTTATATGCCACTTCACATGACATGGAAATGGTCCTTGGGTTGGTTAATGAAGTTTTGGAACATGAGAGAAAATGGTTGCGGACTGAATGCTTGGAGAAATGTGTGTTTCATGGGTCTGGAGTCTCATCTCCAGTGGCTTTGTTTGGATCTGGGGCTGAGATAAAGCATTTGGAAGTTGAAAAACGTTGCCTGAGTGTTGATGTATGTCATCCAAATATAAGTGCATCTGATGAAAAGGAGCTTTTGATGTTTTTGGAGAAAAATTCCTCAGGTAGTATCTGTGCTGTGCACAAGTTTACCACAGTGCAGGATGTTGAGGATAGAGAAAAGTGGGGCAGGATAACATTTCTTTCCCCTGATGCTGCGAAAAAAGCCGCTAAGCTAGATGGCGAGGAGTTTCATGGCTCCTCTTTGAAAATAGTTCCTTCACAGACAGCTAATGGAGGGGATAAAACACTTTCATTTCCTGCTGTTAAAGCTAAAATATATTGGCCTCGTAGGCTTAGCAAGGGATTTGGTATTCTTAAATGTGACATGAAGGATGTTAATTTTATCTTAAGAGATTTGTATAACCTTGCTATAGGAGGAAGATATGTTCGATGTGAAGTTGGCAAAAGGGACTTGGATAGTATTGTTATAGGTGGGCTTGATAAGGAACTCACAGAAGCTGATGTTTTAGATGTACTCAGAACTGCTACAAGTAGGAGGATTGTAGATTTCTTCTTGGTGAGAGGAGACGTTGTTGAAAATCCCCCATGCAGTGCTTGTGAAGAGGCACTCCTAAAAGAACTTTCTCCCTTTATGTCCAAAAGGTACCCCCATGCCAATTGTTGCCGAGTTCAGGTGTTCCCACCTGAGCCGAAGGATGCTAACATGAGAGCTTTAATTACGTTTGATGGGAGATTACATTTGGAGGCAGCCAAGGCTTTGGAGCAAATTGAACGGAAAGCATTGCCTGTATGTCGTTCATGGCAGAAGATAAAGTGCCAGCAGCTGTTTCATAGCTCCTTGACATTCTCTAGTCCTGTGTATCGTGTGATTGAGGAACAACTGCACAAGTTACTTGCAAGCTTCAACAGTCTAAATGGTCTTGAGTGTTGCCTAGACAAGACTGCTAATGGTTCTTATCGAGTTAAGATATCAGCCAATGCCACAAAGATGGTAGCAGAAGTTAGGAGACCTCTGGAAGAACTGACGAGAGGGAAAATCATTAATGACAAGAGTCTCACCCCTACAGTTCTACAGCTCCTGTTTTCCAGAGATGGCTCTATTCTAAAAAGCTCAGTACAACAAGAGACAGGAACATACATTATTTTTGATAGGCATAATCTGAATTTACGGGTGTTTGGCAGCCCAGAGAAGGTTGATTTGGCCTGCCAGAAGCTAATTCAATCTTTACTCTCTCTCCATGAAAGCAAGCAATCAAAAATCCTTCTCAAAGGGAGAGATCTGCCTCCCGACCTAATGAAGCGAGTGGTTAAGAATTTCGGGCCAGATCTCCAGGGGTTAAAAGAGAAGGTACCAGATGCAGACTTTACTCTCAACACACGCCACCAGATAATCTTTCTTCATGGTAACAAGGACTTGAAACCAAAAGTGGAGGAAATAATCTATGAGATTGCTCGTGCAAGTAGTCATCTAGCTGAGAGACTTGGGACTGGATTGGACTGCCCAATTTGCTTGTGCGAGGTTGAGGATGGTTATAAGCTTGAATCCTGTGGACATCTGTTCTGCCGGTTGTGTCTGTTGGAGCAATGTGAATCTGCTATAAAAAACCAGGATAATTTCCCATTATGTTGTGCTCATGAGGGCTGTGGGAATCTCATTCTGCTTACAGACTTGAGAGCCCTTTTGTCTAATGAAAAGTTAGAGGAACTTTTCAGGGCTTCTTTGGGAGCTTTTGTAGCATCTAGCAAAGGCAAATACCGGTTTTGCCCGTCTCCTGACTGCCCCTCAATTTATCGAGTGGCAAGTCCAGAGACAGCTGGTGAGCCATTTCTTTGTGGAGCATGTTATGCAGAGACATGCACAAGGTGTCACTTGGAGTATCACCCGTACCTTTCGTGTGAGAGATACAAGGAGTTCAAGGAAGATCCGGACTCATCACTTAAGGAGTGGTGCAAGGGAAAAGAACATGTTAAGAGCTGCCCTGCATGTGGGTATACGATTGAGAAGATAGACGGGTGCAACCACGTTGGGTGTAAGTGTGGGAAGCATGTGTGCTGGGTTTGTTTGGAGTTCTATGGCAATAGTGATGATTGCTATAACCATTTGAGAAATATACATATGACCATCATATAA 5226 0.4403 MKKTYHYIPPGFRRNPEFHGKDYNPSKFRPGYCSNHHRKSEFRPTQRLDCPPGSFSPTQKPNFVVRLRSGRRSFNKTDVESLIAECKCKPESFSVFPGDHVAAGLNFCQWVDALEAFLCFWEFRLNEVHDFTPEIISHVRVPSDKDELRGRLRALFASHVKGLLEGKEVKRWREESERISKEIARSTYLLNRPISIPMNYELREKKKGLDAEKRLIERRIKEFRSGMECILRYLEDSKAEEDGCAVFRKFKFDEALDWKRIDSLIMRERRRLEEGLPIYAYRSDILQEIHSQQTMVLIAETGSGKSTQLVQFLADSGIGANESIICTQPRKIAARSLAQRVQEESSGCYEDNSIKCYSTFSSSHEFNSKILFMTDNCLLQHYMSDNNLSGISCLIIDEAHERSLNTDLLLALIKSLLCRRVEMRLIIMSATANAKQLSHYFYGCGIFHVFGRNFPVDVRYVPSGHAEHSGSAILASYVSDVVRMATEVHKTEKEGTILAFLTSKAEVEWACEQFQASSAVAFPLHGKLLPEEQFRVFQNYPGKRKVIFATNLAETSLTIPGVKYVIDSGFVKDSQYEPGSGMNVLRVCWISQSSANQRAGRAGRTEPGKCYRLYLESDYNSMPPNQEPEIRRVHLGVAVLRILALGVKNVEDFDFVDAPNPSSIEMAIRNLIQLGAIRLNNNTYELTGEGWYLVKMGVEPRLGKLILGCFRYGLGKEGLALAAVMANASSIFCRVGNEDDKQRSDRLKVQFCHCNGDLFTLLSVYKEWDALPQQCRNKWCWENSINAKSMRRCQDAIMDLESCLERELAVVIPSYWRWDPHKSSDCDKSLKRVILSSLAENVAMYSGCHQLGYEVALTGQLVQLHPSCSLLVFADKPSWVVFGELLSVSSQYLVCVSAFDFESLSTLYPPPLFDVFKMERKKLQMKVLTGLGCTLLKRICGKANCNLLGLVSRVRTACMDERISIEVNVDQNDIRLYATSHDMEMVLGLVNEVLEHERKWLRTECLEKCVFHGSGVSSPVALFGSGAEIKHLEVEKRCLSVDVCHPNISASDEKELLMFLEKNSSGSICAVHKFTTVQDVEDREKWGRITFLSPDAAKKAAKLDGEEFHGSSLKIVPSQTANGGDKTLSFPAVKAKIYWPRRLSKGFGILKCDMKDVNFILRDLYNLAIGGRYVRCEVGKRDLDSIVIGGLDKELTEADVLDVLRTATSRRIVDFFLVRGDVVENPPCSACEEALLKELSPFMSKRYPHANCCRVQVFPPEPKDANMRALITFDGRLHLEAAKALEQIERKALPVCRSWQKIKCQQLFHSSLTFSSPVYRVIEEQLHKLLASFNSLNGLECCLDKTANGSYRVKISANATKMVAEVRRPLEELTRGKIINDKSLTPTVLQLLFSRDGSILKSSVQQETGTYIIFDRHNLNLRVFGSPEKVDLACQKLIQSLLSLHESKQSKILLKGRDLPPDLMKRVVKNFGPDLQGLKEKVPDADFTLNTRHQIIFLHGNKDLKPKVEEIIYEIARASSHLAERLGTGLDCPICLCEVEDGYKLESCGHLFCRLCLLEQCESAIKNQDNFPLCCAHEGCGNLILLTDLRALLSNEKLEELFRASLGAFVASSKGKYRFCPSPDCPSIYRVASPETAGEPFLCGACYAETCTRCHLEYHPYLSCERYKEFKEDPDSSLKEWCKGKEHVKSCPACGYTIEKIDGCNHVGCKCGKHVCWVCLEFYGNSDDCYNHLRNIHMTII 1741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa08g2635 1741 ProSiteProfiles Zinc finger RING-type profile. 1532 1574 IPR001841 -
Bisa08g2635 1741 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 275 784 IPR027417 -
Bisa08g2635 1741 Gene3D - 628 671 IPR042035 -
Bisa08g2635 1741 FunFam RBR-type E3 ubiquitin transferase 649 755 - -
Bisa08g2635 1741 Pfam DEAD/DEAH box helicase 283 436 IPR011545 GO:0003676|GO:0005524
Bisa08g2635 1741 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 392 401 IPR002464 -
Bisa08g2635 1741 Gene3D - 453 625 IPR027417 -
Bisa08g2635 1741 SUPERFAMILY RING/U-box 1686 1733 - -
Bisa08g2635 1741 ProSitePatterns Zinc finger RING-type signature. 1548 1557 IPR017907 -
Bisa08g2635 1741 SMART ibrneu5 1665 1729 IPR002867 GO:0008270
Bisa08g2635 1741 SMART ibrneu5 1599 1664 IPR002867 GO:0008270
Bisa08g2635 1741 CDD RRM_SF 1047 1115 - -
Bisa08g2635 1741 PANTHER ATP-DEPENDENT RNA HELICASE 267 915 - -
Bisa08g2635 1741 FunFam ATP-dependent RNA helicase DEAH12 chloroplastic 453 625 - -
Bisa08g2635 1741 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 830 906 IPR011709 -
Bisa08g2635 1741 CDD DEXHc_RHA-like 293 449 - -
Bisa08g2635 1741 ProSiteProfiles TRIAD supradomain profile. 1528 1736 IPR044066 -
Bisa08g2635 1741 Pfam IBR domain, a half RING-finger domain 1607 1664 IPR002867 GO:0008270
Bisa08g2635 1741 Pfam Helicase associated domain (HA2) 667 761 IPR007502 GO:0004386
Bisa08g2635 1741 CDD BRcat_RBR 1616 1667 - -
Bisa08g2635 1741 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1528 1608 IPR013083 -
Bisa08g2635 1741 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 286 450 IPR014001 -
Bisa08g2635 1741 SMART ultradead3 274 459 IPR014001 -
Bisa08g2635 1741 SMART ha2_5 666 762 IPR007502 GO:0004386
Bisa08g2635 1741 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 480 646 IPR001650 -
Bisa08g2635 1741 SUPERFAMILY RING/U-box 1530 1607 - -
Bisa08g2635 1741 CDD Rcat_RBR_DEAH12-like 1688 1737 - -
Bisa08g2635 1741 Gene3D - 253 452 IPR027417 -
Bisa08g2635 1741 CDD SF2_C_RHA 454 614 - -
Bisa08g2635 1741 FunFam ATP-dependent RNA helicase DEAH12 chloroplastic 259 452 - -
Bisa08g2635 1741 SUPERFAMILY RING/U-box 1613 1670 - -
Bisa08g2635 1741 FunFam Pre-mRNA-splicing factor ATP-dependent RNA helicase 628 671 - -
Bisa08g2635 1741 Gene3D - 1643 1738 - -
Bisa08g2635 1741 SMART helicmild6 508 606 IPR001650 -
Bisa08g2635 1741 Pfam Helicase conserved C-terminal domain 489 605 IPR001650 -
Bisa08g2635 1741 FunFam ATP-dependent RNA helicase DEAH12 chloroplastic 1660 1738 - -
Bisa08g2635 1741 SUPERFAMILY RNA-binding domain, RBD 1086 1207 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa08g2635 Bisa-ChrBisa08 61355168 61361095 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa08g2635 1547 1723 C3H Transcription Factor Family AT2G31770 30.319 1.39e-14 77.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa08g2635 08 61355168 61361095 Bisa08g2635 08 61355168 61361095 ECH