Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa08g2633 ATGAAGAGACCACTTGACAGCACCGATTCTCTAGGTGCTTTAATGACCATGTGTCCGACCGCCACAGAGGAACACAGTCCGAGGAACAACAACGCTGTGTTTCAACAGTCGATGATGTTGGAGGGGCTGGACGAGGAAGAGTCGAGCCATCTCATGATGACGGAGAAGAAACGGCGTCTGAGTGTGGATCAGGTCAAGGCCCTAGAGAAGAACTTCGAGGTTGAGAACAAGCTCGAGCCAGAGAGGAAGGTGAGGCTGGCTCAAGAACTGGGGTTGCAGCCTCGCCAAGTGGCGGTTTGGTTCCAAAACCGTCGCGCTCGATGGAAAACCAAGCAGCTCGAGAGAGATTATGGCGTCCTCAAAGCCAACTACGACGCCCTCAAACTCAACTACGATTCCGTCCAACAGGACAACGAAGCATTACTCAAACAGATTAAGGAATTGAAATTGAGGATGAAAGAAGAGGAGACAGAGAGCGATGTTTCGGTGAAGGAAGAGACAAGAGTGAATGAGACCTTAGAGAAAGTAATGAAGGAACCTTGTGAAACAGAGTGCAAAGACTTGAAGGACTTGAATTATGAGTGCTTGAATAATGGGGTTGGAACGGCGTCGTTTATGGCGGCGGATTTGAAAGACGGTGCTTCAGATAGTGACTCGAGCGCGATCTTGAACGAGGATAACAGCTGCAACGTCGCCGTTTCGTCGTCCGGAGGTCTTCAGAGCCACGGCCAACACCAGTTTATGGTGGTGTCGCCGGTGTCGTCTCCCCTGCAGTTCAATTGTTCGTCGTCGTCGTCGCCGTCGTCCATGAACTGCTTCCAGTTTCAGAAAGCGTATCAGAGTAGTCAGTACGTGAAGATGGAGGAACACAATTTCTTTAGCACAGAAGAGACCTGCGATTTCTTCTCGGAAGAGCAAGCACCCACACTCCAGTGGTACTGCTCTGACCATTGGAGCTAA 960 0.5052 MKRPLDSTDSLGALMTMCPTATEEHSPRNNNAVFQQSMMLEGLDEEESSHLMMTEKKRRLSVDQVKALEKNFEVENKLEPERKVRLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDALKLNYDSVQQDNEALLKQIKELKLRMKEEETESDVSVKEETRVNETLEKVMKEPCETECKDLKDLNYECLNNGVGTASFMAADLKDGASDSDSSAILNEDNSCNVAVSSSGGLQSHGQHQFMVVSPVSSPLQFNCSSSSSPSSMNCFQFQKAYQSSQYVKMEEHNFFSTEETCDFFSEEQAPTLQWYCSDHWS 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa08g2633 319 Pfam Homeodomain 56 109 IPR001356 GO:0003677
Bisa08g2633 319 CDD homeodomain 56 112 IPR001356 GO:0003677
Bisa08g2633 319 SUPERFAMILY Homeodomain-like 47 113 IPR009057 -
Bisa08g2633 319 Coils Coil 110 165 - -
Bisa08g2633 319 PRINTS Lambda-repressor HTH signature 82 91 IPR000047 GO:0003677
Bisa08g2633 319 PRINTS Lambda-repressor HTH signature 91 107 IPR000047 GO:0003677
Bisa08g2633 319 ProSitePatterns 'Homeobox' domain signature. 86 109 IPR017970 GO:0000981|GO:0006355
Bisa08g2633 319 Gene3D - 52 118 - -
Bisa08g2633 319 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 42 292 IPR045224 GO:0003700
Bisa08g2633 319 FunFam Homeobox-leucine zipper protein HAT5 49 113 - -
Bisa08g2633 319 ProSiteProfiles 'Homeobox' domain profile. 51 111 IPR001356 GO:0003677
Bisa08g2633 319 Pfam Homeobox associated leucine zipper 111 151 IPR003106 GO:0006355|GO:0043565
Bisa08g2633 319 SMART HOX_1 54 115 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa08g2633 Bisa-ChrBisa08 61299857 61301053 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa08g2633 1 318 Homeobox Transcription Factor Family AT2G22430 46.398 2.84e-77 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Bisa08g2633 Homeodomain 3.7e-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa08g2633 08 61299857 61301053 Bisa08g2633 08 61299857 61301053 CCT
Bisa08g2633 08 61299857 61301053 Bisa08g2633 08 61299857 61301053 ECH