LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa08g2623	ATGCTGACTCCGAACTTACAGCTCGCGCTTGAGTTGAGAGAAGCACTCTCTGCGAGTGTCAAAAGTTTGAGACTCGCGTTGCTCATACGTGAAATGTTCAACTTGACACAAGAGCGAGTACCCGTGTCTACACCTTACGCGCCACTGCCACGTCGGATCAGCATGTTTTTGGCGGCTTCAAGTCCAACAATGGAAGGGTATGAGATAATCAAAGATATTGGGTCAGGGAATTTTGGTGTCGCGAAGCTGGTCAGAGAGAAACGAAGCGGTGAGTTTTCCGCCGTCAAGTTCATCGAGAGAGGCTCAAAGATCGACGAGCATGTACAGAGGGAGATTATAAACCATAGATCCTTGAAGCATCCTAATATCATCAGGTTTAAGGAGGTGTTGCTAACTCCAACACATCTAGCTATTGTGATGGAATATGCTGCTGGAGGAGAGCTTTTTGAAAGAATATGCAATGCGGGAAGATTCAGCGAGGACGAGGCAAGATACTTCTTTCAGCAATTGATCTCCGGAGTCAGTTACTGCCATTCCATGGAAATCTGTCACAGAGATCTTAAGCTGGAAAACACACTCCTAGATGGAAGCTCAGCACCAAGACTCAAAATTTGCGACTTCGGTTACTCAAAGTCATCTGTTCTACACTCGCAGCCCAAATCAACTGTAGGAACCCCTGCCTATATTGCACCAGAGGTCTTGTCCAGAAGAGAATATGATGGGAAGGTTGCAGATGTTTGGTCTTGTGGGGTGACATTATATGTGATGCTTGTTGGGGCTTATCCATTTGAAGATCCAGAAGACCCCAGAAATTTCAGAAAAACACTTCAGCGAATCCTTAGTGTCCACTATTCTATTCCACACTACGTTCGAGTTTCCCAAGAGTGTAGGCACCTTTTATCCCGAATTTTTGTGGCCAACCCTGAGAAGAGAATTACAATCCCAGAGATCAAAAGGCACCCATGGTTCCTGAATAATTTGCCAGTAGAATTTATGGAGGAAAGTGAAGGTGGGTTGCAAAATGATGTGAATGAAAATGAAGCATGTCAGAGCAATGAGGAAATTCTGTCCATTATTCAAGAGGCTCGGAAGCCAGGGGATTGCCCTAAAATTGGAGGGCAGTTTGTTGGGGGAAGCATGGACCTTGATGACATGGACATAGATGCTGACATCGATGATGTTGAGACAAGTGGTGATTTTGTATGCGCTTTGTGA	1215	0.4519	MLTPNLQLALELREALSASVKSLRLALLIREMFNLTQERVPVSTPYAPLPRRISMFLAASSPTMEGYEIIKDIGSGNFGVAKLVREKRSGEFSAVKFIERGSKIDEHVQREIINHRSLKHPNIIRFKEVLLTPTHLAIVMEYAAGGELFERICNAGRFSEDEARYFFQQLISGVSYCHSMEICHRDLKLENTLLDGSSAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLSRREYDGKVADVWSCGVTLYVMLVGAYPFEDPEDPRNFRKTLQRILSVHYSIPHYVRVSQECRHLLSRIFVANPEKRITIPEIKRHPWFLNNLPVEFMEESEGGLQNDVNENEACQSNEEILSIIQEARKPGDCPKIGGQFVGGSMDLDDMDIDADIDDVETSGDFVCAL	404

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa08g2623	404	ProSiteProfiles	Protein kinase domain profile.	67	323	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa08g2623	404	FunFam	Serine/threonine-protein kinase SRK2E	143	331	-	-
	Bisa08g2623	404	PANTHER	SERINE/THREONINE KINASE	66	346	-	-
	Bisa08g2623	404	ProSitePatterns	Protein kinases ATP-binding region signature.	73	96	IPR017441	GO:0005524
	Bisa08g2623	404	SUPERFAMILY	Protein kinase-like (PK-like)	55	331	IPR011009	-
	Bisa08g2623	404	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	182	194	IPR008271	GO:0004672\|GO:0006468
	Bisa08g2623	404	FunFam	Serine/threonine-protein kinase SRK2E	64	142	-	-
	Bisa08g2623	404	CDD	STKc_SnRK2	67	322	-	-
	Bisa08g2623	404	Gene3D	Transferase(Phosphotransferase) domain 1	143	329	-	-
	Bisa08g2623	404	SMART	serkin_6	67	323	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa08g2623	404	Gene3D	Phosphorylase Kinase; domain 1	53	142	-	-
	Bisa08g2623	404	Pfam	Protein kinase domain	67	323	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa08g2623	Bisa-ChrBisa08	61132072	61136939	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa08g2623	67	333	CBL-interacting serine-threonine protein kinases	AT4G24400	43.478	1.27e-68	221

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_OST1L	Bisa08g2623		Pkinase	1.1e-71	CL0016