Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa08g2602 ATGTCGAATTCCAACAGAGTTTTTCAGACGCTGCCGCCGCGCGCCGAGACCACTTTGACCCGAATAGATCTTGCTGAGGATCCGAATACGAGCTCGGATCCTTGGATTTCGCTTCAGAATCTCTCGATGATTCGAACGAGAATGGATTCTCTGCAACACTTCCTATCTGAATCCATAAACAGCAACGCTTTCGTCAGCAAGGACCAGATGAACATCGTGTCCAACGAGATCGCTTCCGCTCTTAACGAGATTATCATCCACGGCGCCGCTCTTGTCTCCTACTCGCAGAATTCGATGGCCGCCGGCACGTCCCTTCCGTCAGTCTTCGGCGATTTAATCGAGCCACCGGATAAGGTATGTTCGAAGAAGCCGCGTTTTGATTATTCATCTAATTTGAAATTTGAGGTTATGGACGACGAGGAGGTGAAAGACGATGGTGAAGATTGTGAAATCGTGGAGCTCGACGCCGTAGAATTGCTAGCGGAGCACGTTCATTTCTGTGATATTTGCGGGAAAGGGTTCAGGCGCGATGCGAATTTGCGAATGCACATGCGCGCGCACGGAAATCAATTCAAGACGCCGGAAGCGTTGGCGAAACCGTCTGATAGATCTGACATCACTCGCGGCAGAGCGACGCGCTTTTCTTGTCCATTCGAAGGTTGCAATCGGAACAAGATGCACAAGAAATTCCGGCCTCTGAAGTCGATTGTTTGCGTGAAGAACCACTTCAAAAGAAGCCACTGTCCAAAAATGTACTCCTGTAATCGGTGCCACAAGAAGAATTTCTCTGTGCTTTCGGATTTGAAGAGCCATCTGAAGCATTGTGGGGAGCCAAAGTGGAAGTGCTCGTGTGGAACCACCTTTTCGAGAAAAGATAAATTGTTTGGTCACATAGCTCTGTTTGATGGTGGGCATATGCCAGCTCTTGGAGGGGATGAAGAGGAGAAAGGGAAGCAAGTAGATGATGATGGAATGTCGAAAGAAGAGGGGTTGGGGGTTAATTGTTTTGATGATGGGTTACCAGATGGGTTCTTTGATGGTTTAGATGGTTTTGGCTCACTTGACAACTACTGTTTGGAGGAAGCCCTTGGCTTCTCTAATAACGTAACTATTGGAGGACTTCCCTAA 1128 0.4814 MSNSNRVFQTLPPRAETTLTRIDLAEDPNTSSDPWISLQNLSMIRTRMDSLQHFLSESINSNAFVSKDQMNIVSNEIASALNEIIIHGAALVSYSQNSMAAGTSLPSVFGDLIEPPDKVCSKKPRFDYSSNLKFEVMDDEEVKDDGEDCEIVELDAVELLAEHVHFCDICGKGFRRDANLRMHMRAHGNQFKTPEALAKPSDRSDITRGRATRFSCPFEGCNRNKMHKKFRPLKSIVCVKNHFKRSHCPKMYSCNRCHKKNFSVLSDLKSHLKHCGEPKWKCSCGTTFSRKDKLFGHIALFDGGHMPALGGDEEEKGKQVDDDGMSKEEGLGVNCFDDGLPDGFFDGLDGFGSLDNYCLEEALGFSNNVTIGGLP 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa08g2602 375 FunFam Zinc finger 45-like 162 188 - -
Bisa08g2602 375 ProSiteProfiles Zinc finger C2H2 type domain profile. 165 192 IPR013087 -
Bisa08g2602 375 Gene3D Classic Zinc Finger 240 305 - -
Bisa08g2602 375 SMART c2h2final6 252 274 IPR013087 -
Bisa08g2602 375 SMART c2h2final6 214 247 IPR013087 -
Bisa08g2602 375 SMART c2h2final6 165 187 IPR013087 -
Bisa08g2602 375 ProSitePatterns Zinc finger C2H2 type domain signature. 167 187 IPR013087 -
Bisa08g2602 375 Gene3D Classic Zinc Finger 162 187 - -
Bisa08g2602 375 SUPERFAMILY beta-beta-alpha zinc fingers 162 188 IPR036236 -
Bisa08g2602 375 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 136 321 IPR044300 GO:0010044|GO:0010447
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa08g2602 Bisa-ChrBisa08 60776997 60778124 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa08g2602 137 330 C2H2 Transcription Factor Family AT1G34370 57.214 1.42e-75 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bisa08g2602 None None None