Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa08g2563 ATGGCGGCCACTCTTGCTAGGAGGTTTGGTGCCAACAATGGCAACAGCCTTGCTGCTAATGACATGGGAAGAAATGGTGACGGGAACATCCTAGATTCAGAGCCCCCAACTCCACATTCTGTTCTGAAGATGGGATTGAGAGAGCGCAGCAGCAGCATGGAGGATCCAGATGGGACATTAGCAAGTGTTGCCCAATGCATTGAGCAGCTGCGTCAGAGCTCATCCTCTGCACAAGAGAAAGAGTATTCTTTGAGGCAGTTATTGGAGCTTATTGATACACGTGAAAATGCATTCAGTGCTGTTGGGTCTCATTCTCAGGCAGTTCCAGTGCTTGTTTCTCTTCTCCGTTCAGGGTCATTGAGTGTGAAGATTCAGGCAGCAACTGTCTTGGGCTCCCTTTGTGAAGAAAATGAGCTGAGGGTGAAAGTCTTGCTTGGAGGATGCATTCCTCCATTGCTTGGTTTACTCAAGTCCAGTTCAGCTGAAGGTCAAGTTGCTGCTGCAAAGACTATTTATTCTGTTTCTCAAGGTGGCACAAAAGACCATGTTGGATCAAAAATTTTTTCAACTGAAGGAGTGGTACCTGTGCTCTGGGAGCAGCTTCAAAAGGGGCTTAAGACAGGAAACGTAGTTGATAGTTTATTGACTGGAGCATTGAAAAATCTCTCCAGCAGTACTGAGGGATTCTGGAATGCAACAAAACAAGCTAGGGGAGTGGACATATTAATAAAGTTATTGACAACTGGGCAGCCTAGCACTTTAGCTAATGTGTGCTTCCTACTTGCCAGTATGATGATGGAGGATGCATCTGTTTGTTCAAAGGTGTTGACAGCAGAGACGATTAAACTACTCCTCAAACTACTAGGCCCCGGTAATGATGCCCCTGTTAGAGCTGAAGCAGCTGGTGCTCTTAAATCTCTGTCTTCTCAATTCAAAGAAGCAAGGCGGGAGATAGCTAATTCTAATGGTATTCCTGCTTTGATCAATGCTACCATAGCTCCTTCCAAAGAGTTCATGCAGGGTGAGTGTGCTCAAGCATTGCAGGAAAATGCTATGTGTGCTTTAGCAAACATCTCCGGTGGTTTGTCTTATGTCATCTCCAGCCTTGGTCAAAGCCTTGAATCATGCACCTCACCTACCCAAGTTGCTGACACACTGGGGGCTTTAGCTTCAGCTCTTATGATATATGATAACAAGGCAGAATCTACTAGAGCATCAGATCCTCTGGTAGTTGAGCAGACCTTACTCAAGCAATTCAAACCTCACTTGCCTTTCCTTGTGAAGGAACGGACCATTGAAGCCCTAGCTAGTTTGTATGGCAATCCTGTACTCACAATTAAACTTGCAAATTCTGATGCAAAACATTTGCTAGTTGGACTAATAACGATGGCTGTTAATGAAGTGCAAGATGAGCTTATAAAAGCTCTCTTGACACTGTGCAACAATGGGGGCAGTCTATGGCGTGCACTTCAAGGCCGCGAAGGAGTTCAACTACTGATATCTCTCCTGGGGCTTTCATCAGAACAACAACAAGAATGTTCAGTTGCTCTGCTTTGCCTTCTCTCTAATGAAAATGATGAAAGTAAATGGGCCATCACTGCTGCTGGTGGTATACCTCCACTAGTTCAAATTTTGGAGTCAGGATCTGCAAAAGCAAAGGAAGATTCGGCAGCAATCCTTACAAACTTGTGTAATCACAGTGAAGATATACGTGCTTGTGTTGAAAGTGCTGATGCTGTTCCTGCCTTGTTGTGGCTGTTGAAGAATGGAAGCCCAAATGGGAAGGAGATAGCAGCAAAGACCTTAAATCACTTAATTCATAAATCAGATACAGCCACTATCAGTCAGCTTACAGCATTATTAACAAGTGATCAACCTGAATCAAAGGTTTATGTTTTGGATGCTTTGAGGAGTATGCTATCAGTTGCTCCTCTTAGTGACATTCAACGAGAAGGTAGTGCTGCCTGTGATGCAATTGATACAATGATAAAATTACTGAGCTCTACGAAAGAAGAAACTCAGGCAAAGTCTGCATCAGCTTTGGCAGGAATCTTTGAAATGAGGAAAGATGTGCGTGAAAGCAATGTTGCCGTTAAAACTCTATGGTCAGCCATGAAGTTGCTCAATGTTGAATCTGAAAGCATCCTAATAGAGTCCTCACGCTGTCTTGCTGCAATATTTCTTTCCATCAAAGAGAACAGGGATCTAGCTGCTGTTGCTAGAGATACACTCTCCCCCTTAGTTGCACTAGCTAATTCTTCAGTTTTGGAAGTTGCAGAGCTAGCAACATGTGCTGTGGCAAATCTGATTTTAGATAGTGAGATATCAGAGAAAGCTGTTGCTGAAGAAGTTATCTTGCCTGCTAGCAGAGTATTGCGTGAAGGCACGATTTCTGGAAAAACCCATGCTGCAGCAGCAATTGCTCGCCTCTTATATTCTCGGAAAGTTGATTATTCTGTAACCAGCTGTGTGAATCGTGCTGGCACTGTACTTGCTTTGGTTTCCTTCTTAGATACTGCTATTAATGAATCGATGTCCACATCAGAGGCTATAGAAGCACTTGCCATTCTGTCCAAGTCGGAGGCAACTAGTGCACAAGTTAAACCTGCATGGGCTGTATTGGCTGAATTCCCTGAAAGCATAAAGCCAATAGTCCTGTCTATTGCTGAGTCAAAACCGATCATGCAGGATAAAGCTATTGAGATATTATCCCAATTATGCATGGATCAGCCTATTGTTTTGGGGGACACTGTTGCTACTGCCTCTGGATGTATATATTCTTTAGCTAAAAGGGTAATTGGCACCAAAAATGTGAACGTCAAAATTGGGGGATCTGCACTTCTTATTTGTTCTGCCAAAGTAAATCACCAGAGACTGGTGGAGGAACTCAATCAATCAAACTTGTGTACTGATCTTGTTCAATCTCTTGTTAATACGCTTGCTTCTGCACAACCTTCTTTGTCAAACCAGGGAGATGAAGACAAGGAATTCATCAGCATTTGCAGACAAACAAAAGATGCCAACGGTGGCGAATCCAGTACAGGCACCAACATTATTTCTGGTGCCAACTTAGCTATATGGTTACTATCTGTTCTTGCTTGTCATGATGAAAAAAGTAAAATTTCAATAATGGAGGCTGGAGCAATTGATTTTCTCACTGAAAAAATCTCAAAATGTGTCTTACAATATGCTCAGATTGATGATAAAGAAGATAGCAGCATGTGGATTTGTGCTTTGTTGTTGGCAATATTATTTCAAGACAGAGATATCATACGAGCACATGCAACCATGAAATCTATACAAGCACTTGCCAGTTTATTGAAGTCAGAGGAACTAGCTAACAGATATTTTGCTGCACAGTCAATGGCTAGCCTAGTCTGTAATGGTAGCAGGGGGACACTTCTGTCTGTTGCAAACTCTGGGGCTGCAAGTGGACTTATCTCCTTGCTTGGCTGTGCTGACATTGATATACAAGACCTTCTAGATTTGTCAGAAGAATTCTCTTTGGTTCGTTATCCTGATCAAGTTGCTCTTGAGAGGTTGTTCAGAGTTGATGACATTAGGGTTGGTGCGACATCTCGGAAGGCAATACCTGCCCTTGTTGATCTACTCAAACCAATTCCAGATCGCCCAGGAGCACCATTTTTAGCACTTGGGCTTCTAACTCAGCTTGCTAGAGATTGTCCATCAAATAAGATTGTAATGGTAGAATCTGGGGCCTTAGAGGCACTTACCAAGTATCTTTCACTAAGTCCCCAAGATGCAACTGAGGAAGCTGCTACTGATCTATTAGGAATTCTGTTTGACAGTGCTGACATACGGAGACATGAATCAGCATTTGGTGCTGTTACTCAACTTGTAGCTGTCCTACGTTTAGGAGGAAGAGGTGCAAGGTATAGTGCTGCCAAAGCCTTGGAAAGTTTATTCTCTGCGGACCAGATTAGGAATGCAGAGACTGCTCGACAAGCCATTCAACCCTTAGTGGAGATTCTTAATATCGGTTTAGAGAGGGAACAGCATGCTGCAATTGCTGCATTGGTTAGGCTACTAAGTGAAAATCCATCAAGAGCACTAGCTGTTATAGATGTGGAAATGAATGCGGTGGATGTGCTTTGCAGGATCCTATCATCTAATTGTTCAATGGACCTCAAAGGGGATGCTGCTGAATTATGTTGTGTTCTCTTTGGCAATACTAGGATTAGGTCCTCAATGGCTGCTGCACGCTGTGTTGAACCTCTAGTCTCTCTGCTTGTGAGTGAGTTTAGTCCTGCTCAGCAATCAGTTGTCCGTGCATTGGATAGGCTTGTTGATGATGAGCAACTAGCAGAACTAGTTGCTGCTCATGGTGCAGTTATTCCTCTTGTTGGTCTACTCTATGGTAGGAATTATTTGCTTCATGAGGCCATTTCCAGAGCTCTGGTCAAGTTAGGGAAAGACAGGCCTGCTTGTAAAATGGAAATGGTGAAAGCTGGAGTTATTGAAAGCATGCTTGACATTCTCCATGAAGCACCTGATTATTTAGGTGCTGCGTTTGCAGAATTGCTGCGTATATTGACCAACAATGCTAGCATAGCTAAAGGACCATCTGCTGCTAAAGTGGTGGAACCCTTATTTTTGTTGCTGACAAGACAAGAATTTGGGCCTGATGGACAGCACAGTGCCTTGCAGGTTTTGGTTAATATCTTGGAACATCCACAATGTCGTGCTGACTATACATTGACATCTCACCAAGCTATTGAACCACTTATCCCCTTGCTTGATTCTCCAATATCAGCGGTGCAACAGTTGGCTGCTGAGCTTCTCTCGCATCTACTTTTGGAGGAACACCTTCAGAAAGATCCAGCAACACAGCAAGTAATTGGTCCTCTTATTCGAGCTCTTGGTTCTGGCATCCACATATTGCAGCAGAGAGCTGTAAAGGCCCTAGTTAGTATTGCATTGATATGGCCAAATGAAATTGCAAAAGAGGGTGGTGTTATTGAACTTTCCAAAGTGATATTACAAGCTGATCCTTCCCTTCCTCATGCCTTATGGGAGTCTGCTGCTTCTGTTTTGGCAAGTATTCTGCAATTTAGTTCTGAATTCTACTTGGAAGTGCCTGTTGCTGTGTTGGTGAGATTGCTTCGTTCTGGCTCAGAGAGCACAGTCATTGGTGCATTAAATGCTCTTCTAGTGTTGGAAAGTGATGATGGAACTAGTGCGGAAGCAATGGCTGAAAGTGGTGCCATAGAGGCTCTCTTAGAGCTTCTAAGATCTCATCAGTGTGAGGAAACTGCTGCTAGACTGTTAGAAGTATTGCTAAACAATGTTAAGATCAGAGAAACAAAAGCTACTAAGTTAGCCATCTTACCTTTGTCCCAGTACCTCTTGGACCCACAGACTCAAGCACAGCAGGCAAGGTTACTGGCAACTTTGGCTCTTGGTGATCTATTCCAGAATGAGGGTCTTGCTCGGACAACTGATGCAGTTTCAGCATGTCGTGCTTTAGTGAATGTGCTTGAAGATCAACCGACAGAGGAAATGAAAGTTGTAGCCCTTTGTGCTTTGCAAAATCTTGTGATGTACAGTCGATCAAATAAAAGAGCAGTTGCTGAGGCTGGTGGTGTTCAGGTTGTACTGGATCTGATAGGTTCTAGTGATCCAGAAACATCTGTTCAGGCAGCGATGTTCATTAAACTTCTCTTCTCTAATCATACAATTCAAGAATATGCTTCAAGTGAAACAGTCAGAGCAATAACTGCTGCTATTGAAAAGGATTTATGGGCTACTGGAAGTGTGAATGATGAGTATCTGAAAGCCTTGAATGCTCTTTTTAGCAACTTCCCGCGACTGAGAGCAACTGAGCCAGCAACTCTTAGCATTCCCCATCTGGTGACATCTTTAAAGACAGGTTCAGAGGCCACTCAAGAAGCTGCCTTGGATGCACTTTTTCTTCTCAGGCAAGCTTGGTCGGCATGCCCAGCAGAAGTCTCAAGAGCTCAGTCAATAGCAGCTGCAGATGCTATTCCTTTGCTGCAGTACTTAATCCAGTCTGGCCCCCCTGGGTTTCAAGAGAAGGCAGAATTTTTGTTGCAGTGTTTGCCAGGGACATTAGTTGTGATCATCAAGCGTGGAAACAATATGAAGCAGTCAGTTGGAAACCCTAGTGTTTTTTGTAAGCTTACACTTGGAAATACTCCACCAAGGCAAACCACGGTGGTTTCAACTGGGCCTAATCCGGAGTGGGATGAGAGCTTTTCATGGTCCTTTGAGAGTCCTCCAAAAGGCCAGAAACTTCATATTTCTTGCAAAAATAAGAGCAAAATGGGAAAGAGTTCATTTGGGAAGGTGACAATCCAAATTGATCGGGTCGTTATGCTAGGAGCAGTATCCGGAGAGTACACTTTATTGCCGGAAAGTAAAAGTGGCCCCTCGAGGAATTTAGAAATAGAATTTCAATGGTCTAACAAGTGA 6453 0.4348 MAATLARRFGANNGNSLAANDMGRNGDGNILDSEPPTPHSVLKMGLRERSSSMEDPDGTLASVAQCIEQLRQSSSSAQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSGSLSVKIQAATVLGSLCEENELRVKVLLGGCIPPLLGLLKSSSAEGQVAAAKTIYSVSQGGTKDHVGSKIFSTEGVVPVLWEQLQKGLKTGNVVDSLLTGALKNLSSSTEGFWNATKQARGVDILIKLLTTGQPSTLANVCFLLASMMMEDASVCSKVLTAETIKLLLKLLGPGNDAPVRAEAAGALKSLSSQFKEARREIANSNGIPALINATIAPSKEFMQGECAQALQENAMCALANISGGLSYVISSLGQSLESCTSPTQVADTLGALASALMIYDNKAESTRASDPLVVEQTLLKQFKPHLPFLVKERTIEALASLYGNPVLTIKLANSDAKHLLVGLITMAVNEVQDELIKALLTLCNNGGSLWRALQGREGVQLLISLLGLSSEQQQECSVALLCLLSNENDESKWAITAAGGIPPLVQILESGSAKAKEDSAAILTNLCNHSEDIRACVESADAVPALLWLLKNGSPNGKEIAAKTLNHLIHKSDTATISQLTALLTSDQPESKVYVLDALRSMLSVAPLSDIQREGSAACDAIDTMIKLLSSTKEETQAKSASALAGIFEMRKDVRESNVAVKTLWSAMKLLNVESESILIESSRCLAAIFLSIKENRDLAAVARDTLSPLVALANSSVLEVAELATCAVANLILDSEISEKAVAEEVILPASRVLREGTISGKTHAAAAIARLLYSRKVDYSVTSCVNRAGTVLALVSFLDTAINESMSTSEAIEALAILSKSEATSAQVKPAWAVLAEFPESIKPIVLSIAESKPIMQDKAIEILSQLCMDQPIVLGDTVATASGCIYSLAKRVIGTKNVNVKIGGSALLICSAKVNHQRLVEELNQSNLCTDLVQSLVNTLASAQPSLSNQGDEDKEFISICRQTKDANGGESSTGTNIISGANLAIWLLSVLACHDEKSKISIMEAGAIDFLTEKISKCVLQYAQIDDKEDSSMWICALLLAILFQDRDIIRAHATMKSIQALASLLKSEELANRYFAAQSMASLVCNGSRGTLLSVANSGAASGLISLLGCADIDIQDLLDLSEEFSLVRYPDQVALERLFRVDDIRVGATSRKAIPALVDLLKPIPDRPGAPFLALGLLTQLARDCPSNKIVMVESGALEALTKYLSLSPQDATEEAATDLLGILFDSADIRRHESAFGAVTQLVAVLRLGGRGARYSAAKALESLFSADQIRNAETARQAIQPLVEILNIGLEREQHAAIAALVRLLSENPSRALAVIDVEMNAVDVLCRILSSNCSMDLKGDAAELCCVLFGNTRIRSSMAAARCVEPLVSLLVSEFSPAQQSVVRALDRLVDDEQLAELVAAHGAVIPLVGLLYGRNYLLHEAISRALVKLGKDRPACKMEMVKAGVIESMLDILHEAPDYLGAAFAELLRILTNNASIAKGPSAAKVVEPLFLLLTRQEFGPDGQHSALQVLVNILEHPQCRADYTLTSHQAIEPLIPLLDSPISAVQQLAAELLSHLLLEEHLQKDPATQQVIGPLIRALGSGIHILQQRAVKALVSIALIWPNEIAKEGGVIELSKVILQADPSLPHALWESAASVLASILQFSSEFYLEVPVAVLVRLLRSGSESTVIGALNALLVLESDDGTSAEAMAESGAIEALLELLRSHQCEETAARLLEVLLNNVKIRETKATKLAILPLSQYLLDPQTQAQQARLLATLALGDLFQNEGLARTTDAVSACRALVNVLEDQPTEEMKVVALCALQNLVMYSRSNKRAVAEAGGVQVVLDLIGSSDPETSVQAAMFIKLLFSNHTIQEYASSETVRAITAAIEKDLWATGSVNDEYLKALNALFSNFPRLRATEPATLSIPHLVTSLKTGSEATQEAALDALFLLRQAWSACPAEVSRAQSIAAADAIPLLQYLIQSGPPGFQEKAEFLLQCLPGTLVVIIKRGNNMKQSVGNPSVFCKLTLGNTPPRQTTVVSTGPNPEWDESFSWSFESPPKGQKLHISCKNKSKMGKSSFGKVTIQIDRVVMLGAVSGEYTLLPESKSGPSRNLEIEFQWSNK 2150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa08g2563 2150 Gene3D C2 domain 2028 2150 IPR035892 -
Bisa08g2563 2150 Gene3D - 612 823 IPR011989 -
Bisa08g2563 2150 ProSiteProfiles C2 domain profile. 2010 2127 IPR000008 -
Bisa08g2563 2150 Gene3D - 1176 1365 IPR011989 -
Bisa08g2563 2150 Gene3D - 1649 2027 IPR011989 -
Bisa08g2563 2150 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 1195 1239 IPR000225 GO:0005515
Bisa08g2563 2150 SUPERFAMILY ARM repeat 1365 1657 IPR016024 -
Bisa08g2563 2150 SMART arm_5 311 360 IPR000225 GO:0005515
Bisa08g2563 2150 SMART arm_5 1565 1606 IPR000225 GO:0005515
Bisa08g2563 2150 SMART arm_5 1228 1269 IPR000225 GO:0005515
Bisa08g2563 2150 SMART arm_5 136 176 IPR000225 GO:0005515
Bisa08g2563 2150 SMART arm_5 268 309 IPR000225 GO:0005515
Bisa08g2563 2150 SMART arm_5 1438 1478 IPR000225 GO:0005515
Bisa08g2563 2150 SMART arm_5 93 135 IPR000225 GO:0005515
Bisa08g2563 2150 SMART arm_5 1480 1520 IPR000225 GO:0005515
Bisa08g2563 2150 SMART arm_5 733 771 IPR000225 GO:0005515
Bisa08g2563 2150 SMART arm_5 1310 1351 IPR000225 GO:0005515
Bisa08g2563 2150 SMART arm_5 1183 1226 IPR000225 GO:0005515
Bisa08g2563 2150 SMART arm_5 1397 1437 IPR000225 GO:0005515
Bisa08g2563 2150 SMART arm_5 1729 1768 IPR000225 GO:0005515
Bisa08g2563 2150 SMART arm_5 1856 1896 IPR000225 GO:0005515
Bisa08g2563 2150 SMART arm_5 567 607 IPR000225 GO:0005515
Bisa08g2563 2150 SMART arm_5 646 686 IPR000225 GO:0005515
Bisa08g2563 2150 SMART arm_5 1813 1854 IPR000225 GO:0005515
Bisa08g2563 2150 SMART arm_5 817 859 IPR000225 GO:0005515
Bisa08g2563 2150 SMART arm_5 525 565 IPR000225 GO:0005515
Bisa08g2563 2150 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2028 2147 IPR035892 -
Bisa08g2563 2150 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 536 578 IPR000225 GO:0005515
Bisa08g2563 2150 Gene3D - 426 611 IPR011989 -
Bisa08g2563 2150 Gene3D - 824 1166 IPR011989 -
Bisa08g2563 2150 CDD C2 2031 2121 - -
Bisa08g2563 2150 FunFam Protein CELLULOSE SYNTHASE INTERACTIVE 1 1379 1613 - -
Bisa08g2563 2150 Gene3D - 48 412 IPR011989 -
Bisa08g2563 2150 Gene3D - 1366 1647 IPR011989 -
Bisa08g2563 2150 FunFam Coatomer beta subunit 1615 2028 - -
Bisa08g2563 2150 FunFam Protein CELLULOSE SYNTHASE INTERACTIVE 1 2029 2150 - -
Bisa08g2563 2150 SUPERFAMILY ARM repeat 57 643 IPR016024 -
Bisa08g2563 2150 Pfam C2 domain 2029 2125 IPR000008 -
Bisa08g2563 2150 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 31 2150 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Bisa08g2563 2150 MobiDBLite consensus disorder prediction 10 38 - -
Bisa08g2563 2150 SUPERFAMILY ARM repeat 1676 2027 IPR016024 -
Bisa08g2563 2150 SUPERFAMILY ARM repeat 1024 1378 IPR016024 -
Bisa08g2563 2150 Coils Coil 297 317 - -
Bisa08g2563 2150 SUPERFAMILY ARM repeat 615 914 IPR016024 -
Bisa08g2563 2150 SMART C2_3c 2030 2126 IPR000008 -
Bisa08g2563 2150 Pfam Armadillo/beta-catenin-like repeat 104 134 IPR000225 GO:0005515
Bisa08g2563 2150 Pfam Armadillo/beta-catenin-like repeat 525 564 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa08g2563 Bisa-ChrBisa08 60107334 60117037 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa08g2563 488 620 U-box Gene Family AT2G23140 40.741 2.84e-12 70.1