Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa08g2557 ATGAGCACCGTACGCCTTGACGACGATGGATGCTGTAACGAAGCCACGCCCACGTTTCAATTCTTCATGAACTGCCAGGCTGCATTACGTAGCCTCGACCCAGAGGTGCATGACAGAAGTCGAGGAGTTGAAGAAGGAATATATATTGTGTGGCTGAAGATGGTTGTTTTTGCCTTCTTGGCTAACAGAACCAATCTTTTTAAAATCAAGAAGTTTGGTCAAAGCAAGGCACTAGAGAAGAAGCATGATAGCAACCAAGATAAAGCCACAGCAACTAAGGCGCCGAAGAAGAAGCACGAAAGCAACCGAGATGAAGCAAGGTGCGACGAAGCATGGATGGACGGTTACGATTCCAACTCTAAAGTGAAATTGGAGCCAACAAATTTGGATAATCCGCACTCTGATTTTTGTCCTATTTGCTGGGAGCATGGGGCCTCTGTGGAATCAGATTGTGTCAATCTGGTGAAGGGTTTTGCAAAGGATGGTGCGGAAGTTTCGTTTCATCTGCTCCGTGATTTAGTTATAAACAAGCTCCATTTTGGGTTCGATTTTGATTCTGCCCAAGTGACCATCCAATTTTTCTTGTTTGGCAGCTCAGACACTCCTGAATTGGATCGGTCAGGAATCTCCCTTGCGGAAGCCATGACGGCTCTCTCTGAGATTTTCTCTCAGCTTTGCACCAAGGCCATAGTCCTATTGGCTCTATTGCTAATACAACTGCTACTCCTTATAAGGAAGCTCAAGTCAGATACACGTCCAATCACCACCACCCAATACCTCAAACTCATAGAACAGAAGAACCCCACAATTTGTTTCACCAAAAGATTGAAGCCAGAGCACGCAGAGTGCAGGGTTTGCTTATCTGAATTCCAGGAAGGGGAAAGAGTGAGGAACTTGAAATGCAAACACACGTTTCACAAAGATTGCTTGGACAAGTGGTTGCAGCAATACTGGGCTACCTGCCCACTTTGCAGGAACCAAGTTCTGCCAGATGATGTTGTGGCCAAGTATCGCCAGCTTCAAAATCAGGTAGAATCTGATGGAAATGATGAGCCAGTTATCTTCTTGTTATCTGCATTATGTGGTAGCAGTAATTACCACAGATATCTCTGA 1113 0.4519 MSTVRLDDDGCCNEATPTFQFFMNCQAALRSLDPEVHDRSRGVEEGIYIVWLKMVVFAFLANRTNLFKIKKFGQSKALEKKHDSNQDKATATKAPKKKHESNRDEARCDEAWMDGYDSNSKVKLEPTNLDNPHSDFCPICWEHGASVESDCVNLVKGFAKDGAEVSFHLLRDLVINKLHFGFDFDSAQVTIQFFLFGSSDTPELDRSGISLAEAMTALSEIFSQLCTKAIVLLALLLIQLLLLIRKLKSDTRPITTTQYLKLIEQKNPTICFTKRLKPEHAECRVCLSEFQEGERVRNLKCKHTFHKDCLDKWLQQYWATCPLCRNQVLPDDVVAKYRQLQNQVESDGNDEPVIFLLSALCGSSNYHRYL 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa08g2557 370 Pfam Ring finger domain 282 325 IPR001841 -
Bisa08g2557 370 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 246 330 IPR013083 -
Bisa08g2557 370 PANTHER - 215 364 - -
Bisa08g2557 370 ProSiteProfiles Zinc finger RING-type profile. 283 325 IPR001841 -
Bisa08g2557 370 MobiDBLite consensus disorder prediction 80 105 - -
Bisa08g2557 370 SMART ring_2 283 324 IPR001841 -
Bisa08g2557 370 SUPERFAMILY RING/U-box 265 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa08g2557 Bisa-ChrBisa08 59975240 59981136 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa08g2557 281 339 C3H Transcription Factor Family AT1G15100 52.542 9.66e-18 77.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa08g2557 08 59975240 59981136 Bisa08g2557 08 59975240 59981136 CCT
Bisa08g2557 08 59975240 59981136 Bisa08g2557 08 59975240 59981136 ECH