Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa08g2478 ATGTATGCTTCTTCTTCTTCTTCTTCTTTTACTTCCTCTGTTTCTGAACTCTTCCATGAGCTTCACTCGAGAAGACTACTCCTGCTTCACTCGCCACCATCTTCCCCAACCACCCACAACGAGACTTCCTCAGACTCCTACCTAGGAAACGGCAATTTCGATGCAAACGTTGTCATGGTCCTATCTGTTCTCCTCTGTGCTCTCATCTGCTCTCTGGGTCTCAACTCCATCATCAGATGCGCCTTAAGGTGTTCCAGTTTGGTCCTCAACGACCCCAACACCAACACCGCCAACCCCCCACCTCGCGTGGCCAACACTGGGATCAAGAAGAAAGCTCTGAAGACCTTCCCCACAGTGTCATTCTCTGCAGAATCCAAACTCCCAGGTTTGGACAGCGAGTGTGCCATCTGTCTATCTGAGTTCACCGATGGTGATCGCCTCAGAATCCTTCCCAAGTGTAACCATGGCTTTCATGTTCGTTGCATTGACAAGTGGCTGAGCTCTCATTCTTCTTGTCCTAAATGCAGACACTGCCTCATTGGGACTTGTCAGAAGATTGTTGGGTCCTCATCTTCATCGTCGTCGTCCCAATCATCTGTCCCAGAAACCATTGTCAGGATCCAACCCTTGGAACCTGAAGGTTTGGTACGTAATTACAGGGACACTTAG 669 0.4933 MYASSSSSSFTSSVSELFHELHSRRLLLLHSPPSSPTTHNETSSDSYLGNGNFDANVVMVLSVLLCALICSLGLNSIIRCALRCSSLVLNDPNTNTANPPPRVANTGIKKKALKTFPTVSFSAESKLPGLDSECAICLSEFTDGDRLRILPKCNHGFHVRCIDKWLSSHSSCPKCRHCLIGTCQKIVGSSSSSSSSQSSVPETIVRIQPLEPEGLVRNYRDT 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa08g2478 222 SMART ring_2 134 175 IPR001841 -
Bisa08g2478 222 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 96 180 IPR013083 -
Bisa08g2478 222 FunFam RING-H2 finger protein ATL73 94 181 - -
Bisa08g2478 222 Pfam Ring finger domain 133 176 IPR001841 -
Bisa08g2478 222 CDD RING-H2_EL5-like 133 176 - -
Bisa08g2478 222 ProSiteProfiles Zinc finger RING-type profile. 134 176 IPR001841 -
Bisa08g2478 222 PANTHER RING-H2 FINGER PROTEIN ATL78 18 215 IPR044602 GO:0016567|GO:0016740
Bisa08g2478 222 SUPERFAMILY RING/U-box 113 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa08g2478 Bisa-ChrBisa08 58569594 58570262 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa08g2478 27 185 C3H Transcription Factor Family AT1G20823 44.512 9.10e-42 139