Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa08g2470 ATGATAAGAGACGATCTGTACATCACAGTTCCCAGCTTCTTCCGCTGCCCCATATCCCTCGACGTCATGAAGTCTCCGGTCAGCCTCTGCACCGGCGTTACCTACGACCGTTCCAGCATCCAGCGCTGGCTTGACAACGGCAACAACACCTGCCCTGCCACCATGCAGGTTTTGCAAACCAAGGATTTTGTTCCCAATCGGACTCTACAGAGGCTTATCCAGATCTGGTCCGACTCCGTTCGCCACCGACTCGAATCTGCCGAGGCTCCGCCTGGCAGAGCTGTGTTTTCACAGGATGAAGTCGTTGACACTATCAGACACTTAGAGGGCCATAGGGAGAACTGTCTCGATTCTCTGACGAGGATTCTGTGTTTTGCGGAAGAATCTGAGGACAACCGGGAATTCCTCGCCAGATTAGACGGATTCGTGCATATGCTCGTTGATATGCTCGACAATGTCGATGGCGGCGTTGACACTCTCGAGAAAGTGGTTCGTGCTTTGGATTCGGTTCTGAATAGAATCGAAGATCGCGAGCAGTTGAAGAAATCGATATTGAAGAGCCACGGCAATTGCTTGGCTTCTCTGCTTCTTGTTCTGCAGCAAGGAAGCTCCGGTTCGAAAATCGGATCGGCGAGGATTCTGAAATGCATCGCCGTGGACGCCGAGTCGAAGGTCATGATCGCGGAAAAGGAAGGCCTCATAGCTGAATTGCTTGAATCAATCGCTCCGGACAAAGACCCGGCGCTAATTGAGAACGGCTTGTCGTGCTTGGTGGCAATCTCGACGCAGAGGCGGAACAAGTTGAAGCTAATCCATCTCGGAGCTATCAAGACACTCTCGCAACTGCTTTCGGGGTCAAATTGGAGCGTTTCCATAACGGAAAAAGTCCTGAAACTGCTCGAAATGGTGTCGTCCACTAAGGAAGGTAGGTCGGAGATTTGCGAGGACCCGACGTGCGTGCCGTCGGTATTGCAGAAAGTCCTGAAAGTATCGAGCATCGCAACGGAGCACGCAGTGACTATACTGTGGAGTGTGTGTTGTCTGTTTCGCGATCAGAAGGCGCAGGAAGCGGTGACATTGGCCAACGGTCTGACCAAGATTCTGCTTCTGATGCAGAGCAATTGTTCGCCGGCGGTTCGGCAAATGTCCGCCGATTTGCTTAAGATTTTCCGGGTCAATTCGAAATCATGCCTTTCTTGTTATGACACTAAGACCACCCATATCATGCCCTTCTGA 1236 0.517 MIRDDLYITVPSFFRCPISLDVMKSPVSLCTGVTYDRSSIQRWLDNGNNTCPATMQVLQTKDFVPNRTLQRLIQIWSDSVRHRLESAEAPPGRAVFSQDEVVDTIRHLEGHRENCLDSLTRILCFAEESEDNREFLARLDGFVHMLVDMLDNVDGGVDTLEKVVRALDSVLNRIEDREQLKKSILKSHGNCLASLLLVLQQGSSGSKIGSARILKCIAVDAESKVMIAEKEGLIAELLESIAPDKDPALIENGLSCLVAISTQRRNKLKLIHLGAIKTLSQLLSGSNWSVSITEKVLKLLEMVSSTKEGRSEICEDPTCVPSVLQKVLKVSSIATEHAVTILWSVCCLFRDQKAQEAVTLANGLTKILLLMQSNCSPAVRQMSADLLKIFRVNSKSCLSCYDTKTTHIMPF 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa08g2470 411 Gene3D - 242 391 IPR011989 -
Bisa08g2470 411 PANTHER WDSAM1 PROTEIN 9 399 IPR045185 GO:0061630
Bisa08g2470 411 SUPERFAMILY ARM repeat 113 393 IPR016024 -
Bisa08g2470 411 Gene3D - 85 238 IPR011989 -
Bisa08g2470 411 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 84 IPR013083 -
Bisa08g2470 411 Pfam U-box domain 10 78 IPR003613 GO:0004842|GO:0016567
Bisa08g2470 411 FunFam RING-type E3 ubiquitin transferase 2 82 - -
Bisa08g2470 411 CDD RING-Ubox_PUB 11 63 IPR045210 -
Bisa08g2470 411 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
Bisa08g2470 411 Coils Coil 157 177 - -
Bisa08g2470 411 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Bisa08g2470 411 SUPERFAMILY RING/U-box 5 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa08g2470 Bisa-ChrBisa08 58457725 58458960 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa08g2470 1 411 U-box Gene Family AT5G64660 56.706 3.45e-154 440
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa08g2470 08 58457725 58458960 Bisa08g2470 08 58457725 58458960 ECH