Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa08g2468 ATGCTGATTCCTTCTGATGAAGGAGATTTCGATGATGTATTCTTTGACCCTGTGGATTGTCTGTCACCTCAAGAGTCTGCTTTAGGTTCCAAGGTGTTCGATTATGAGATTTGGGTGAATGAACCTCAGAGTGTGAAGGAAAGACGACAACGTTTTCTAAAAGAAATGGGGTTATCTAACATTTCTTCAAAAGCCACACCAGAGAGAGTTAGAAACACCAACGGAGGAGCAGTCTCAAATGCACCGGAGGAATCAACTTCTAAAGCAAACGATCTTTTTGATGAAAGAGAAGGGTGTCCTAAAGATGAAGCAAATGTAAGTTTTCAAGGGCATAGACACACAGAAGCAGAGGTCCAAGAAGAAGGACATGGGGATTCTGATATGAGCAAGAAGAAGAACTGGTGGAAGCAATTCGTGAAAATGAGATCAAAACTCAATAAAGGGGCAAACAAGAGTCGTAGGATAAAGGTGAGGAGGAACAAGAAGAGATGGATGGAGTTCAGTGGGTTATATATAGGACAAGAGATCAGAGCTCACAAAGGCATTATATGGACTATGAAGTTTAGTCCCAATGGAAAGTACCTAGCAAGTGGAGGTGAAGATGGAGTTGTGAGAGTATGGCGCGTTATGTTGAAAGATACATCTAGTAATTGCTTTGATGCAGAAGACAGTCTTGTTAGCAAAGTGAAACAAGACATATTTTGTTCTTGGAAGAAACAGTCAAGCCATAACTCCATTGTTCTTCCAAATAAGGTTTTCCAAATTGAGGAATCACCACTCCAAGAATTATATGGCCATTCCAGTGATGTCTTGGATTTGGCATGGTCTAATTCAAATATTCTCCTTTCATCTTCCATGGATAAAACTGTTCGTTTATGGCAAATTGGTTGCAATAAATGTTTAAGTGTTTTTCGTCACAATGACTATGTGACCTGCATTCAGGTCAACCCTGTTGATGAAAATTACTTCATCAGTGGATCCATCGATGGTAAAGTACGAATATGGGGATTATATGAAGAACGAGTCGTTGATTGGGCTGATATTCATGATGTTATAACTGCTATAAGTTACCAGCCAAATGGGAAAGGATTTGTAGTTGGCTCGCTTTCAGGAACTTGTCGCTTTTATGTTGCTTCAGGCAAACATTTTGGGCTTGAGGCACAAATACGTGTTGCTGGAAAGAAGAGATCGAGTGGCAACAAGATTACTGGCATTCAGTTTTCCCAGGAGAAACATCAAAGAGTTTTGATCACATCAGAAGATTCCAAACTTCGCTTGTTGGAAGGGGTTGATGTAGTCCAGAAATACAGTGGTCTTCCCAAGTCAGGAAGTCAGGTGTCTGCTTCATTTACTTCAGGTGGAAACCATATAATCTCCGCTGGTGAAGACTCTCATGTCTATATTTGGAATTTTAGTGACTCAGAAAATCCATCACCAAAACACACGAAATCGGATCATTCCTGCGAGTACTTTTCCTCGAAGGGTGTTACTGTTGCAGTACCTTGGTCAGGCCTGAGTACAGACCAAGTGGCCTCTGGTTTTGCTCACTGTACTACCGAAATGCAACACCAAGTGGCTAAAGACTTGGATTGCTTTTCTCGTGGTAATTGGTTCTCCATCGATGGCCCCTTTCGAGGCTCCATGATATGGCCAGAGGAGAAGCTTCCTGGTTGGGATTCACATTTTACACAAGATGAATGTTGTGATCATCTACGTCCCAAGGATCCTTGGGGACTGTCAATTGTAGCTGCTGATTGTGATGGAATTCTCAAGACTTTCCACAACTTTGGATTGCCTGTTAAGCTTTAA 1809 0.4151 MLIPSDEGDFDDVFFDPVDCLSPQESALGSKVFDYEIWVNEPQSVKERRQRFLKEMGLSNISSKATPERVRNTNGGAVSNAPEESTSKANDLFDEREGCPKDEANVSFQGHRHTEAEVQEEGHGDSDMSKKKNWWKQFVKMRSKLNKGANKSRRIKVRRNKKRWMEFSGLYIGQEIRAHKGIIWTMKFSPNGKYLASGGEDGVVRVWRVMLKDTSSNCFDAEDSLVSKVKQDIFCSWKKQSSHNSIVLPNKVFQIEESPLQELYGHSSDVLDLAWSNSNILLSSSMDKTVRLWQIGCNKCLSVFRHNDYVTCIQVNPVDENYFISGSIDGKVRIWGLYEERVVDWADIHDVITAISYQPNGKGFVVGSLSGTCRFYVASGKHFGLEAQIRVAGKKRSSGNKITGIQFSQEKHQRVLITSEDSKLRLLEGVDVVQKYSGLPKSGSQVSASFTSGGNHIISAGEDSHVYIWNFSDSENPSPKHTKSDHSCEYFSSKGVTVAVPWSGLSTDQVASGFAHCTTEMQHQVAKDLDCFSRGNWFSIDGPFRGSMIWPEEKLPGWDSHFTQDECCDHLRPKDPWGLSIVAADCDGILKTFHNFGLPVKL 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa08g2468 602 PANTHER WD REPEAT DOMAIN 44 130 599 IPR040324 -
Bisa08g2468 602 ProSiteProfiles Trp-Asp (WD) repeats profile. 263 303 IPR001680 GO:0005515
Bisa08g2468 602 Pfam WD domain, G-beta repeat 258 293 IPR001680 GO:0005515
Bisa08g2468 602 Pfam WD domain, G-beta repeat 299 335 IPR001680 GO:0005515
Bisa08g2468 602 Pfam WD domain, G-beta repeat 175 207 IPR001680 GO:0005515
Bisa08g2468 602 Pfam WD domain, G-beta repeat 446 470 IPR001680 GO:0005515
Bisa08g2468 602 MobiDBLite consensus disorder prediction 63 129 - -
Bisa08g2468 602 MobiDBLite consensus disorder prediction 63 87 - -
Bisa08g2468 602 PRINTS G protein beta WD-40 repeat signature 323 337 IPR020472 -
Bisa08g2468 602 PRINTS G protein beta WD-40 repeat signature 195 209 IPR020472 -
Bisa08g2468 602 PRINTS G protein beta WD-40 repeat signature 281 295 IPR020472 -
Bisa08g2468 602 ProSiteProfiles Trp-Asp (WD) repeats profile. 303 337 IPR001680 GO:0005515
Bisa08g2468 602 FunFam WD repeat-containing protein 44 160 502 - -
Bisa08g2468 602 ProSiteProfiles Trp-Asp (WD) repeats profile. 447 479 IPR001680 GO:0005515
Bisa08g2468 602 ProSiteProfiles Trp-Asp (WD) repeats profile. 176 209 IPR001680 GO:0005515
Bisa08g2468 602 Gene3D - 168 504 IPR015943 GO:0005515
Bisa08g2468 602 SMART WD40_4 339 377 IPR001680 GO:0005515
Bisa08g2468 602 SMART WD40_4 297 336 IPR001680 GO:0005515
Bisa08g2468 602 SMART WD40_4 388 428 IPR001680 GO:0005515
Bisa08g2468 602 SMART WD40_4 429 470 IPR001680 GO:0005515
Bisa08g2468 602 SMART WD40_4 169 208 IPR001680 GO:0005515
Bisa08g2468 602 SMART WD40_4 256 294 IPR001680 GO:0005515
Bisa08g2468 602 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 176 209 - -
Bisa08g2468 602 SUPERFAMILY WD40 repeat-like 170 475 IPR036322 GO:0005515
Bisa08g2468 602 MobiDBLite consensus disorder prediction 88 129 - -
Bisa08g2468 602 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 263 295 - -
Bisa08g2468 602 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 303 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa08g2468 Bisa-ChrBisa08 58407745 58410314 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa08g2468 260 467 U-box Gene Family AT2G33340 28.378 3.54e-07 51.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa08g2468 08 58407745 58410314 Bisa08g2468 08 58407745 58410314 ECH