Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa08g2464 ATGGCTCCTGCCACCTCCTCGCCGGCGGCGGCCCAGAGGCTAATCGGCTTCAGTCGCCGCACGCAGGCTCCTCGCCAGCCGTCGGCGCCGGCGTCCCCTCCGGCGAAGAAATATAAGTCTATGGCCGAGGTGATGGAAAAGGCGCGGTATGCTGTCATTGAGCGGGACGATTACAGCGACGTGACCTGTCACCAATGCGGCTCTGGTGAAAGACCAGACGAGCTGCTTCTGTGTGACAAATGTGATAAAGGCTTCCACATGAAATGCGTGAGGCCCATTGTTGTCAGAGTTCCAATCGGATCATGGCTTTGCCCTAAATGTTCGGGAGAGAAGAGAGTAAGAAGTTTCTCTCAGAAGAAGATAATTGATTTTTTCCGGATTCAGAAGGGTACTAATCTTAAAGACAAATACTCTTCTCCCCAAGATGCTAGGAAGCGTAAAAGGCGTACAGGATCACTGGTATTGCAAAAGAAACGAAGGAGATTATTGCCATTTGTTCCTACAGAAAATCCCTCCCAGAGAATGAAACAGATGGGTTCCCTTGCTTCTGCTTTAACAGGATCCCATATGGAATTTAGTGATGATCTCACATACTTGCCTGGGATGGCTCCTAGGTCTGCTAATCACGCCAAATTTGAAGATGGTGGCATGCAGGTTCTTTCCAGGGAAGATACTGAGACAGTGGAACACTGCAGAGCAATGTGCAGAAGGGGCGAATGCCCTCCCCTTATGGTTGTTTATGATTCACGTGAAGGGTATACAGTAGAGGCAGATGGCCCAATCAAGGATCTGACATTCATTGCTGAATACACAGGCGATGTGGATTACATTAAGAACCGAGAGCATGACGATTGTGACAGTCTGATGACCCTTCTTTTAGCAACAGATCCTAATAAAAGTCTCGTCATCTGCCCTGATAAACGTGGAAACATCGCTCGCTTCATCAGTGGCATCAACAATCATACTCTGGAAGGTAGGAAGAAGCAGAACTGTAAATGTGTAAGATACAGTGTTAATGGTGAATGCAGGGTCTTTTTGGTTGCTACTCGTGATATTTCTGAAGGGGAGAGGCTTTATTATGACTATAACGGTTATGAGCATGAATACCCGACTCATCATTTTGTCTGA 1128 0.4734 MAPATSSPAAAQRLIGFSRRTQAPRQPSAPASPPAKKYKSMAEVMEKARYAVIERDDYSDVTCHQCGSGERPDELLLCDKCDKGFHMKCVRPIVVRVPIGSWLCPKCSGEKRVRSFSQKKIIDFFRIQKGTNLKDKYSSPQDARKRKRRTGSLVLQKKRRRLLPFVPTENPSQRMKQMGSLASALTGSHMEFSDDLTYLPGMAPRSANHAKFEDGGMQVLSREDTETVEHCRAMCRRGECPPLMVVYDSREGYTVEADGPIKDLTFIAEYTGDVDYIKNREHDDCDSLMTLLLATDPNKSLVICPDKRGNIARFISGINNHTLEGRKKQNCKCVRYSVNGECRVFLVATRDISEGERLYYDYNGYEHEYPTHHFV 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa08g2464 375 CDD SET_ATXR5_6-like 238 375 - -
Bisa08g2464 375 PANTHER N-LYSINE METHYLTRANSFERASE KMT5A 132 373 - -
Bisa08g2464 375 Pfam SET domain 287 363 IPR001214 GO:0005515
Bisa08g2464 375 FunFam Histone-lysine N-methyltransferase ATXR5 147 375 - -
Bisa08g2464 375 ProSiteProfiles Zinc finger PHD-type profile. 60 110 IPR019787 -
Bisa08g2464 375 SUPERFAMILY FYVE/PHD zinc finger 27 108 IPR011011 -
Bisa08g2464 375 SUPERFAMILY SET domain 228 363 IPR046341 -
Bisa08g2464 375 CDD PHD_RSF1 63 107 - -
Bisa08g2464 375 Gene3D SET domain 147 375 IPR046341 -
Bisa08g2464 375 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 122 IPR013083 -
Bisa08g2464 375 Pfam PHD-finger 63 108 IPR019787 -
Bisa08g2464 375 MobiDBLite consensus disorder prediction 1 38 - -
Bisa08g2464 375 ProSitePatterns Zinc finger PHD-type signature. 63 107 IPR019786 -
Bisa08g2464 375 SMART PHD_3 62 108 IPR001965 -
Bisa08g2464 375 ProSiteProfiles SET domain profile. 241 363 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa08g2464 Bisa-ChrBisa08 58362872 58366515 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa08g2464 58 113 C2H2 Transcription Factor Family AT3G01460 39.286 5.95e-10 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Bisa08g2464 SET 4.1e-05 No_clan