Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa08g2459 ATGTTTGGTGTGCGCTGTTCTACCGGAATCGTTTCTGATGTTGTTCACCGGCTTCGGCAAACTTTATTGCTTCATGGTGTACGTGTGCAACATATAAATATTGGAGGTGGTGTTGGAGGGGAAATCCCAGATAACAAGCGCCTTCAGTATGCTCTGCAGCACATACACGGAATTGGCCGTGCCAAAGCTCACCATATTGTCTGTGAGCTTGGCGTTGAGAACAAATATGTCAAGGACCTAAGTAAAAGAGAGTTATTTACCCTTCGTGAATTACTTTCCAAATACCTGCTTGGAAATGACTTGAGAAAATGTGTTGAGAAAGACATCGAAAGGTTGGTGAATATTCAGTGCTACAGAGGGTTCAGGCATGCGGATGGGTTACCCTGCAGAGGACAGCGCACCCATACAAATGCCCGCACCAGGAAGAGTAGGCCAGGTTTTGGTGGATCTAAATTTCAATAA 462 0.4524 MFGVRCSTGIVSDVVHRLRQTLLLHGVRVQHINIGGGVGGEIPDNKRLQYALQHIHGIGRAKAHHIVCELGVENKYVKDLSKRELFTLRELLSKYLLGNDLRKCVEKDIERLVNIQCYRGFRHADGLPCRGQRTHTNARTRKSRPGFGGSKFQ 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa08g2459 153 FunFam Ribosomal protein S13 104 142 - -
Bisa08g2459 153 Hamap 30S ribosomal protein S13 [rpsM]. 26 150 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Bisa08g2459 153 Gene3D 30s ribosomal protein s13, domain 2 105 145 IPR027437 -
Bisa08g2459 153 Pfam Ribosomal protein S13/S18 39 140 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Bisa08g2459 153 SUPERFAMILY S13-like H2TH domain 39 143 IPR010979 GO:0003676
Bisa08g2459 153 FunFam 30S ribosomal protein S13 38 103 - -
Bisa08g2459 153 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 32 142 - -
Bisa08g2459 153 MobiDBLite consensus disorder prediction 130 153 - -
Bisa08g2459 153 ProSiteProfiles Ribosomal protein S13 family profile. 38 143 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Bisa08g2459 153 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 signature 2. 26 39 IPR022657 -
Bisa08g2459 153 Gene3D - 38 103 - -
Bisa08g2459 153 ProSitePatterns Ribosomal protein S13 signature. 119 132 IPR018269 GO:0003723|GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa08g2459 Bisa-ChrBisa08 58318456 58319711 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa08g2459 25 143 Cytoplasmic Ribosomal Protein Gene Family AT4G09800 29.371 3.82e-07 45.4