Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa08g2420 ATGGAAGATCACGAAAGCCCCACCAACACTAACAATCACAATCATAACAACAATAACAACAACAATAATAATAACAATTTGCCTACTGGTCCTAGCACAGGAAGTCCAGAAAGCCCATGCTTAAAATCCAACACCTCAAACAAAGAACAAGATCGCTTTCTTCCCATTGCCAACGTTGGCAGAATCATGAAGAAAGTGATGCCTGGGAATGGCAAAATCTCAAAGGATGCCAAAGAGACTGTTCAGGAATGTGTCTCTGAGTTCATCAGCTTCGTCACAGGCGAAGCCTCAGACAAATGTCAGAGAGAAAAGAGGAAGACTATTAATGGCGACGACATCATATGGGCCATCACAACCCTGGGCTTCGAGGACTACGTGGACCCTTTAAAGTCTTACCTTCAGAAATACAGACAGATAGAAGAAGAGAAGCTCAACGTTCCAAAGCAACAACGTTCTGAACAGAGGCTTCATCATCATCATCATCAACAACAACATCATCATCATCAACACCAACAACAACAGCAACAAAACCATCACCACCATGAACAAAGTAACCATTTACCTTTAAATAATAGTGTATATTCTTCAACCAATCTCATTTCTCAGCCTCCTCCTTATGTGGCAACGGATCAGCCATTTTCGTTACCTTTCTCCCCAAATTCAATTCAGAAACAGTTACAGCCCCAAGACAATATGGATTCAGTGGGGCACTGGTAA 717 0.4198 MEDHESPTNTNNHNHNNNNNNNNNNNLPTGPSTGSPESPCLKSNTSNKEQDRFLPIANVGRIMKKVMPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVDPLKSYLQKYRQIEEEKLNVPKQQRSEQRLHHHHHQQQHHHHQHQQQQQQNHHHHEQSNHLPLNNSVYSSTNLISQPPPYVATDQPFSLPFSPNSIQKQLQPQDNMDSVGHW 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa08g2420 238 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 11 182 IPR027113 GO:0001228|GO:0006355|GO:0016602
Bisa08g2420 238 FunFam Nuclear transcription factor Y subunit B-3 42 187 - -
Bisa08g2420 238 PRINTS CCAAT-binding transcription factor subunit A signature 81 99 - -
Bisa08g2420 238 PRINTS CCAAT-binding transcription factor subunit A signature 100 118 - -
Bisa08g2420 238 PRINTS CCAAT-binding transcription factor subunit A signature 119 137 - -
Bisa08g2420 238 MobiDBLite consensus disorder prediction 186 232 - -
Bisa08g2420 238 Gene3D Histone, subunit A 40 187 IPR009072 GO:0046982
Bisa08g2420 238 MobiDBLite consensus disorder prediction 145 238 - -
Bisa08g2420 238 MobiDBLite consensus disorder prediction 10 51 - -
Bisa08g2420 238 ProSitePatterns NF-YB/HAP3 subunit signature. 84 100 IPR003956 GO:0005634|GO:0006355|GO:0043565
Bisa08g2420 238 SUPERFAMILY Histone-fold 50 178 IPR009072 GO:0046982
Bisa08g2420 238 MobiDBLite consensus disorder prediction 1 51 - -
Bisa08g2420 238 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 53 117 IPR003958 -
Bisa08g2420 238 MobiDBLite consensus disorder prediction 153 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa08g2420 Bisa-ChrBisa08 57770886 57771602 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa08g2420 2 238 CCAAT-HAP3 Transcription Factor Family AT2G13570 56.735 3.40e-69 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Bisa08g2420 CBFD_NFYB_HMF 1.7e-27 CL0012