Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa08g2399 ATGAGAATTGAGAGAGAAGCCCTGAAGAGCTTACGTGGAGGCTGGAGCGTGGCGGCTAAGCCATGCGACTCCTGCAAATCGGCGGCATCGGCTGTGTTCTGTCGAGCCGATTCCGCCTTCCTGTGCATGGCTTGCGATAGCCGAATCCACTGCGCCAACAAGGTGGCTTCCCGCCACGAGCGCGTGTGGATGTGCGAGGTGTGCGAGCAAGCTCCCGCTGCCGTCACGTGCAAGGCCGACGCCGCCGCTCTCTGTTTCACTTGCGATTCCGACATCCACTCCGCCAACCCGCTGGCCCGCCGTCACGAGCGAGTCCCGGTGGAGCCCTTCTTCGACTCCGCCGAGTCGGCGATGAAATCCTCCGCCTCTGCTGCTTTCAACTTCCTCGTTCCCACCGAAAATTCGATTTCCTCCGACTGCTTCCACCACGACAATCCTGAGCCGGCTCCCTGGCTCCTCCCTAACCCGAATTTCAATTCCAAGCTCGGGGAGGCTCAGGAAATCAAGTCCGGCGACATGTTCTTCTCGGAAATGGATCCGTACTTGGATTTCGATTATCCCAACTCCTATCAGAGTAATAACAATCACAACGCCGCGAACGACAGTGTAGTGCCAGTTCAAAACAAACCTTCTTCGATTCCGGTGGCGAATCTCTCCGATAGTTGCTTCGATATTGATTTTTGCAGATCGAAGCTTTCTTCATTGAGCTACCCAAGCCAAAGCATTTCGTCTTCTTCGGTTGATGTTGGGGTGGTGCCAGACTCGGTGTCAGAAATGTCGTACTCTATTGGACGAAACATAAGCAACAGCTCCGAATCAGGAGGAATCGGGTCGGCGGTCTACAACCAGGCGACCCAACTGGGTGGAATGGATCGGGAAGCGAGGGTAATGAGATACAGAGAGAAAAGGAAGAACCGCAAATTCGAGAAAACCATACGCTACGCTTCGCGAAAAGCGTACGCGGAGACCCGGCCCAGGATTAAGGGCCGGTTCGCAAAACGGACCGAAACCGACTCGGAGGTGGAACGACTCTATAGCCCTGTCGGCACGGGGAGTCTTTTGGTGGAAGCCCAGTACGGCGTCGTACCGTCTTTCTAG 1098 0.5556 MRIEREALKSLRGGWSVAAKPCDSCKSAASAVFCRADSAFLCMACDSRIHCANKVASRHERVWMCEVCEQAPAAVTCKADAAALCFTCDSDIHSANPLARRHERVPVEPFFDSAESAMKSSASAAFNFLVPTENSISSDCFHHDNPEPAPWLLPNPNFNSKLGEAQEIKSGDMFFSEMDPYLDFDYPNSYQSNNNHNAANDSVVPVQNKPSSIPVANLSDSCFDIDFCRSKLSSLSYPSQSISSSSVDVGVVPDSVSEMSYSIGRNISNSSESGGIGSAVYNQATQLGGMDREARVMRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTETDSEVERLYSPVGTGSLLVEAQYGVVPSF 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa08g2399 365 CDD Bbox1_BBX-like 65 107 - -
Bisa08g2399 365 CDD Bbox1_BBX-like 21 64 - -
Bisa08g2399 365 ProSiteProfiles Zinc finger B-box type profile. 17 64 IPR000315 GO:0008270
Bisa08g2399 365 Pfam CCT motif 292 334 IPR010402 GO:0005515
Bisa08g2399 365 ProSiteProfiles Zinc finger B-box type profile. 60 107 IPR000315 GO:0008270
Bisa08g2399 365 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 21 347 IPR045281 GO:0009909
Bisa08g2399 365 ProSiteProfiles CCT domain profile. 292 334 IPR010402 GO:0005515
Bisa08g2399 365 Pfam B-box zinc finger 62 107 IPR000315 GO:0008270
Bisa08g2399 365 SMART bboxneu5 65 107 IPR000315 GO:0008270
Bisa08g2399 365 SMART bboxneu5 17 64 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa08g2399 Bisa-ChrBisa08 57067538 57068829 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa08g2399 1 365 C2C2-CO-like Transcription Factor Family AT5G57660 55.556 1.21e-130 376
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Bisa08g2399 zf-B_box 3.4e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa08g2399 08 57067538 57068829 Bisa08g2399 08 57067538 57068829 ECH