Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa08g2397 ATGGCTTCTTCCCCTTCTAAAATACTCATTGGCCTTCCCTTAGACCAAGATGATAGCAAGGAGCTCCTCTCATGGGCTATAAGAGTTCTTGCCCATCCACATGACACCATTGTCGCCCTCCATGTTCTTGTTGGAGAGGATAAGAAGAAGAGGAGGAAGAAGAAAAAGAAGCGTGACTCAATGACAAGAAGGCAATCACAACTTCGGCAGGCTAAGGCTTATGTTATATCTGTGCTTGGTGAATTTGCGAGGGCATGTTGGTGTAAGCAGGTGAATTTGGAAGCTAAAGTGGCATTTAGTTCCCAAGTGGGTGGAGGCTTAGTGGAAGAAGCCAAGTCCATTTCTGCTGACTTTCTTCTTCTTCGTGGCTCAAGAAACCAATCTAATAAGATTAAGGGTTTTGATGGAATTACCAAGTATTGCTTTGAGAATGTTCATGAAAGCTGCACGGTGGTCTCAGTTGGAAAGAGTTTCAAATCCAATTCTACAAATCTTCACAGTGACAGAGAAGCTTCCCCTGTTTTAAATGATTTTATCTCAGACTCTAAGACACAAACACGTTCACCAAGAACGGTATTGGACGCACTTGAGGGACAATCTAACAGCACCGAAGATGATACTTTTAGCACAAGGGTCTCAAGCGTCACAGACACTACTTCTTCACTCACTCCTAAGAACAAAAGCCAATCCAAGTTGAGGAAACCTCAATCGCCATTCAGACTCATAGCCTCATTCTTTGGCTCACCATTGAGAAGAAACAAGTCTAGAATTTCCAAAAATGAAAAGAAACAGCCTCTTTTGAAGTGCTTCAGCTACGAGGAGATCTCCAATGCCACTAATGGCTTCCACCACGAGAATTTGCTGGGACGAGGTGGGTACTCTGAAGTGTACAGAGGAGAGGTTAGTGATGGAGAAAGCATCGCAGTGAAAAGGTTGTCGAAAGACAACAAGGATCCCAACAAGGAAAAGGAGTTCCTCATGGAATTGGGAATCATCGGACATGTCTCTCATCCTAACACCGCATCTTTAGTTGGATGTTGCATCGAAAATGGCCTCTACCTCATTTTCAAGTACTCCCAAAATGGAAACTTGGCCACTGCATTGCACGGGAAAGGAGGGAAGCCACTGGAATGGGCAACGAGATACAAAATTGCCATTGGAGTTGCGAGGGGTCTGCATTATCTTCACAAATGTTGCAAGCACCGAATAATTCATCGTGACATTAAGGCCTCCAACGTGCTTCTGGATCCAGATTATGAGCCACAGATAAGTGATTTCGGGCTAGCAAAGTGGCTTCCAAACAAGTGGACGCACCATGCTGTGACCCCAGTGGAGGGAACATTTGGGTACTTAGCACCAGAGTGCTTCATGCATGGAATCGTGGACGAGAAAACAGATGTTTATGCCTTCGGGATTCTGCTTCTCGAGATTATCACTGGCCGCAGACCTGTTGATTCTTCAAAACAAAACCTTCTCCTATGGGCAAAGCCAGTGATGGAATCAGGAAAGATAGGAGAGCTAGCTGATCCAAAAATGGAAGGAGCATATGACGAAGAGCAATTGCAAAGGGTTGTGCTCACTGCTTCTTACTGTGTCAGACAATCTCCCATTTGGCGTCCTCCAATGAGCGAGGTGCTGGAACTACTAACCAGTGGGGAAGACAGTGAGGGTGGAAAGAGCTGGAGGATGCCAAAGTTCAGTTCTGATGAGTGGGATGATTACTCCATGGTTTTCGGATACGAAGTCCCCTCAGACATATCTCTTGAGGATTATTTGTAA 1779 0.4514 MASSPSKILIGLPLDQDDSKELLSWAIRVLAHPHDTIVALHVLVGEDKKKRRKKKKKRDSMTRRQSQLRQAKAYVISVLGEFARACWCKQVNLEAKVAFSSQVGGGLVEEAKSISADFLLLRGSRNQSNKIKGFDGITKYCFENVHESCTVVSVGKSFKSNSTNLHSDREASPVLNDFISDSKTQTRSPRTVLDALEGQSNSTEDDTFSTRVSSVTDTTSSLTPKNKSQSKLRKPQSPFRLIASFFGSPLRRNKSRISKNEKKQPLLKCFSYEEISNATNGFHHENLLGRGGYSEVYRGEVSDGESIAVKRLSKDNKDPNKEKEFLMELGIIGHVSHPNTASLVGCCIENGLYLIFKYSQNGNLATALHGKGGKPLEWATRYKIAIGVARGLHYLHKCCKHRIIHRDIKASNVLLDPDYEPQISDFGLAKWLPNKWTHHAVTPVEGTFGYLAPECFMHGIVDEKTDVYAFGILLLEIITGRRPVDSSKQNLLLWAKPVMESGKIGELADPKMEGAYDEEQLQRVVLTASYCVRQSPIWRPPMSEVLELLTSGEDSEGGKSWRMPKFSSDEWDDYSMVFGYEVPSDISLEDYL 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa08g2397 592 Gene3D HUPs 1 154 IPR014729 -
Bisa08g2397 592 SMART serkin_6 282 549 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bisa08g2397 592 Pfam Universal stress protein family 12 152 IPR006016 -
Bisa08g2397 592 Pfam Protein tyrosine and serine/threonine kinase 284 547 IPR001245 GO:0004672|GO:0006468
Bisa08g2397 592 Gene3D Transferase(Phosphotransferase) domain 1 360 563 - -
Bisa08g2397 592 ProSiteProfiles Protein kinase domain profile. 282 566 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bisa08g2397 592 MobiDBLite consensus disorder prediction 179 235 - -
Bisa08g2397 592 ProSitePatterns Serine/Threonine protein kinases active-site signature. 403 415 IPR008271 GO:0004672|GO:0006468
Bisa08g2397 592 Gene3D Phosphorylase Kinase; domain 1 246 358 - -
Bisa08g2397 592 PANTHER OS08G0249100 PROTEIN 53 562 IPR046958 -
Bisa08g2397 592 FunFam Putative receptor-like serine/threonine-protein kinase 249 358 - -
Bisa08g2397 592 ProSitePatterns Protein kinases ATP-binding region signature. 288 310 IPR017441 GO:0005524
Bisa08g2397 592 FunFam Probable receptor-like serine/threonine-protein kinase At5g57670 359 563 - -
Bisa08g2397 592 SUPERFAMILY Protein kinase-like (PK-like) 259 549 IPR011009 -
Bisa08g2397 592 CDD USP_Like 7 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa08g2397 Bisa-ChrBisa08 57039278 57045002 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa08g2397 270 588 Trihelix Transcription Factor Family AT1G70460 42.136 9.45e-77 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Bisa08g2397 PK_Tyr_Ser-Thr 4.1e-44 CL0016