Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa08g2396 ATGGGATCCAGTCTCAGTTGTTGTGGCTCTGACAAAGTGGAAGAAGTGCCAACGTCAGTTGGTGTGGCTAACAATTCATGGAGAATATTCACATACAAGGAGTTGCATGCAGCTACAAACGGTTTCAGTGAAGATTACAAACTTGGAGAAGGTGGGTTTGGAAGCGTCTACTGGGGAAGAACCAGCGATGGTCTCCAGATCGCGGTGAAGAAACTGAAAGCAATGAACTCAAAGGCAGAGATGGAATTTGCAGTGGAAGTGGAAGTTCTGGGAAGAGTGAGGCACAAGAATCTGTTAGGGCTGCGAGGGTACTGTGCAGGGGATGAACAACGCCTCATAGTGTACGACTACATGCCCAATCTCAGCCTTCTCTCTCATCTCCATGGCCAATTCACTGGTGATATCCATCTCGACTGGAAAAGGAGGATGAACATTGCAATCGGCTCTGCTGAAGGCTTATTGTACTTGCATCACGAGGTGACACCCCACATAATCCATAGGGACATCAAGGCGAGCAACGTGCTATTAAATTCAGAGTTCGAGCCTCTGGTTGCAGACTTCGGGTTCGCAAAGCTAATCCCAGAAGGAGTGAGCCACTTGACCACTCGTGTTAAGGGCACTTTAGGGTACTTGGCTCCCGAGTATGCCATGTGGGGCAAAGTGTCCGAGAGCTGTGACGTTTACAGCTTCGGGATTCTTCTGTTAGAGCTCGTGACTGGAAGAAAGCCCATAGAGAAAATTCCAGGAGGGTTCAAGAGAACCATAACGGAATGGGCTGAGCCATTCATAAGCAAAGGGAAGTATAGGGACATGGTGGATCCAAGGCTTAGAGGGAACTTCGACGAGAACCAAGTGATGCAGACCATCAATGTGGCTGCTCTCTGTGTGCAAAGCGAGCCTGAGAAGAGACCTAATATGAAGCAAGTGGTTAACCTTCTGAAGGGATACGACGCAGATCATGGAAAGGTCACGAAGATGAGGATAAATAGCATTAAATATAATGAACAACTTATGGAGCTTGATCAGAACACTGACGATGAAGATGAGACCAATGGTTATGGTGTTTTTAGTGCCCTTGAGGTGCGAAAGATGCATGATCGTAATTACAAGCGCGGTGACGGAAAGAAAATGGCTATGCCTCTTTGA 1146 0.4738 MGSSLSCCGSDKVEEVPTSVGVANNSWRIFTYKELHAATNGFSEDYKLGEGGFGSVYWGRTSDGLQIAVKKLKAMNSKAEMEFAVEVEVLGRVRHKNLLGLRGYCAGDEQRLIVYDYMPNLSLLSHLHGQFTGDIHLDWKRRMNIAIGSAEGLLYLHHEVTPHIIHRDIKASNVLLNSEFEPLVADFGFAKLIPEGVSHLTTRVKGTLGYLAPEYAMWGKVSESCDVYSFGILLLELVTGRKPIEKIPGGFKRTITEWAEPFISKGKYRDMVDPRLRGNFDENQVMQTINVAALCVQSEPEKRPNMKQVVNLLKGYDADHGKVTKMRINSIKYNEQLMELDQNTDDEDETNGYGVFSALEVRKMHDRNYKRGDGKKMAMPL 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa08g2396 381 FunFam PTI1-like tyrosine-protein kinase At3g15890 14 117 - -
Bisa08g2396 381 ProSitePatterns Protein kinases ATP-binding region signature. 48 71 IPR017441 GO:0005524
Bisa08g2396 381 Gene3D Transferase(Phosphotransferase) domain 1 118 339 - -
Bisa08g2396 381 CDD STKc_IRAK 48 315 - -
Bisa08g2396 381 ProSitePatterns Serine/Threonine protein kinases active-site signature. 164 176 IPR008271 GO:0004672|GO:0006468
Bisa08g2396 381 PANTHER OS01G0253100 PROTEIN 25 317 - -
Bisa08g2396 381 SUPERFAMILY Protein kinase-like (PK-like) 26 324 IPR011009 -
Bisa08g2396 381 FunFam PTI1-like tyrosine-protein kinase At3g15890 118 331 - -
Bisa08g2396 381 ProSiteProfiles Protein kinase domain profile. 42 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bisa08g2396 381 SMART serkin_6 42 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bisa08g2396 381 Gene3D Phosphorylase Kinase; domain 1 14 117 - -
Bisa08g2396 381 Pfam Protein tyrosine and serine/threonine kinase 46 313 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa08g2396 Bisa-ChrBisa08 57021934 57026089 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa08g2396 1 358 Trihelix Transcription Factor Family AT1G70460 43.360 1.52e-95 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Bisa08g2396 PK_Tyr_Ser-Thr 6.6e-42 CL0016